Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P19
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 216 1e-56
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 205 2e-53
01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783... 42 5e-04
04_04_1362 + 32897581-32897925,32897979-32897984 30 1.1
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.4
03_01_0427 + 3296717-3296861,3296966-3297210 28 6.0
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 27 8.0
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 27 8.0
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 216 bits (527), Expect = 1e-56
Identities = 105/152 (69%), Positives = 120/152 (78%), Gaps = 1/152 (0%)
Frame = +3
Query: 21 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 200
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRKLPL +A RYL++V K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 201 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQV 377
RR+ GGVGR AQAK + QGRWP KSA F+L LL+NAESNA+ KGLDVD L + HIQV
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 378 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 473
N+A RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 205 bits (500), Expect = 2e-53
Identities = 104/164 (63%), Positives = 119/164 (72%), Gaps = 13/164 (7%)
Frame = +3
Query: 21 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKLPLRRAVRYL 164
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RKLPL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 165 KNVTEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADYKGL 341
++V K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L LL+NAESNAD KGL
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120
Query: 342 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 473
DVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct: 121 DVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILS 164
>01_05_0708 +
24477228-24477375,24477823-24477905,24478233-24478391,
24478882-24478992,24479098-24479164,24479269-24479537
Length = 278
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 273 KKSAEFLLQLLRNAESNADYK-GLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 449
K++A+ + Q++ +A +NA + GLD D+L+++ V + L+R +Y A GR +
Sbjct: 159 KRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGVMVRPR 218
Query: 450 CHIEV 464
C + V
Sbjct: 219 CRLTV 223
>04_04_1362 + 32897581-32897925,32897979-32897984
Length = 116
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 307 LKSWSRNSADFLGQRPCVVPNCLACAQRPTPPLKRRKGMH 188
L++W R SA + RP + ACA+ P +R +G +
Sbjct: 14 LRAWIRRSATAVALRPLLTGVAAACAEAIASPARRGRGRY 53
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 201 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADYKGLDVDRLVIDHIQ 374
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 375 VNRAPCLR 398
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 262 PCVVPNCLACAQRPTPPLKRRKGM 191
PCV+PNC A A R P L + M
Sbjct: 92 PCVIPNCKASAARLCPLLLSQSHM 115
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 74 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 163
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 74 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 163
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,414
Number of Sequences: 37544
Number of extensions: 299850
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -