Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P18
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   4.3  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    24   5.6  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    24   7.5  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    24   7.5  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    24   7.5  

>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +2

Query: 137 LKLSTLMVAYSVSLTASLTVTFIRTVVGIRNPVAGSALALTVVHTKYLHRLVRTNHFTRK 316
           +K+       S   T SL +T  R+V+G +NP  G A  +       L  +    HF R 
Sbjct: 312 IKIGLFFPVKSFDGTKSLVLT-TRSVLGGKNPFLGIAYIVVSAVCVVLGTVFTLRHFIRP 370

Query: 317 NLL 325
             L
Sbjct: 371 RKL 373


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 156 ISVDSFNVLSRL--LIQSKIISSPRWSSRVK 70
           IS+D  + LS L  LIQSK +S   WSS  K
Sbjct: 55  ISLDGGSHLSALVELIQSKHLSVDSWSSITK 85


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 260 VVHTKYLHRLVRTNHFT 310
           + H K  H+L+RT HFT
Sbjct: 56  IFHGKNRHQLLRTCHFT 72


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 70  LDPAGPTWGGNNLALNQQSGQYVEAI 147
           +DP  P +  N  A   Q GQ+  A+
Sbjct: 112 IDPTSPVYYSNRAAAYNQLGQFENAV 137


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 300 LVRTSRCKYFVCTTVRASADPATGL 226
           L  T R  Y  CT+ +   DP TGL
Sbjct: 198 LFMTFRSIYPSCTSAKIIVDPVTGL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,382
Number of Sequences: 5004
Number of extensions: 26679
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)