Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P18
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 28 1.7
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 28 1.7
08_01_0076 - 540886-541527,542173-542754 28 2.2
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 27 3.9
11_04_0027 - 12453488-12453547,12454972-12455673,12455907-124559... 27 5.1
09_02_0015 - 2980811-2980924,2981231-2981266,2981447-2981519,298... 27 5.1
07_03_0382 + 17470508-17470807,17471449-17474517 27 5.1
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799... 27 5.1
02_03_0154 + 15797731-15798798 27 5.1
01_05_0709 + 24480660-24481796 27 5.1
09_06_0265 + 21933913-21933993,21934108-21934404 26 6.7
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 26 6.7
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 26 8.9
04_04_1559 - 34428286-34429062 26 8.9
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = +1
Query: 34 RTISRRAMRVTGLDPAGPTWGGNNLALNQQSGQYVEAIHTDGGLLGIFDRIAHGDFYPNG 213
R + R + V D AG + G+N G+ + +H+ F R G N
Sbjct: 235 RLVPRMTVDVNFSDVAGESEAGSNQGT---PGRPLHHVHSISPSTASFARSPFGSLQHNS 291
Query: 214 GRNPQPGCWVSTCSHSR 264
G P+ ST S SR
Sbjct: 292 GHTPRSPATFSTASPSR 308
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 28.3 bits (60), Expect = 1.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 124 SGQYVEAIHTDGGLLGIFDRIAHGDFYPNG 213
+G Y +H +G + + +++G +YPNG
Sbjct: 571 NGAYTSTVHQNGHAKKLANGLSNGTYYPNG 600
>08_01_0076 - 540886-541527,542173-542754
Length = 407
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 337 WFMLEQILPCKVIGADKSMQILRMHDCESKC*PSNRVADSY 215
WF L + L ++I +K I R H C C P +Y
Sbjct: 284 WFELNRELALRIIADNKYYSIFRKH-CRPSCYPDEHYIPTY 323
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 173 IPSKPPSVWIASTYCPDC*FRARLFPPHVGPAGS--RPVT 60
+P +P S + +S+ CP + + P H G +GS PVT
Sbjct: 69 LPQRPRSSYSSSSPCPHAFTTSTVAPSHPGSSGSVDPPVT 108
>11_04_0027 -
12453488-12453547,12454972-12455673,12455907-12455940,
12456005-12456125,12456509-12457139
Length = 515
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 109 ALNQQSGQYVEAIHTDGGLLGIFDRI 186
+L Q Y +A+H+D L +FDR+
Sbjct: 149 SLGQPGRSYAQAVHSDIPLKSVFDRL 174
>09_02_0015 -
2980811-2980924,2981231-2981266,2981447-2981519,
2981608-2981882,2982286-2982504,2983537-2983828,
2983863-2984221,2984634-2984714,2984746-2984889,
2985235-2985538,2985617-2985849
Length = 709
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 151 TDGGLLGIFDRIAHGDFYPNGGRNPQPGCWVST 249
++GG + + DR+ + NG R P G WV +
Sbjct: 582 SNGGTINLPDRVVCLNLQVNGSRVPLVGTWVKS 614
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 191 TVTFIRTVVGIRNPVAGSALALTVVHTKYLHRL 289
TVT ++TV+ +NP+ L KYLH L
Sbjct: 538 TVTSLKTVILYKNPLRNQGLDKLFKGLKYLHVL 570
>06_01_1023 -
7996240-7996369,7997166-7997260,7997430-7997515,
7998034-7998184
Length = 153
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 46 RRAMRVTGLDPAGPTWGGNNLALNQQSGQYV 138
RR R G DP P WGG + G+ V
Sbjct: 11 RRRRRGGGSDPPSPMWGGGRRRAVSRRGKLV 41
>02_03_0154 + 15797731-15798798
Length = 355
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 243 DPATGLRIPTTVRIKVTVSDAVKDTE 166
D +GLR P +V +V VSDA D +
Sbjct: 106 DVVSGLRTPVSVPPQVVVSDAAADAD 131
>01_05_0709 + 24480660-24481796
Length = 378
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 310 CKVIGADKSMQILRMHDCESKC*PSNRVADSYHRSDKSHRERCGQRYRVSHH 155
C GAD ++ +L+ V DSY++ K HR R V H
Sbjct: 134 CIATGADSALHLLQRESPPPSLQLFTSVIDSYYKQRKPHRAEQLWREMVEDH 185
>09_06_0265 + 21933913-21933993,21934108-21934404
Length = 125
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 177 KDTE*ATISVDSFNVLSRLL 118
++ E TISVD FN L RLL
Sbjct: 57 EEAEVCTISVDRFNTLGRLL 76
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 238 WVSTCSHSRAYEVFASTCPHQSLYK 312
+ S+ H +Y+ F S+ HQS+YK
Sbjct: 430 YTSSEDHQASYKGFGSSTSHQSVYK 454
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 184 CGQRYRVSHHQCG*LQRIVQIVDSEQDY-FLPTLVQQ 77
CG YR CG + I+ D E FLP VQ+
Sbjct: 1707 CGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQR 1743
>04_04_1559 - 34428286-34429062
Length = 258
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -3
Query: 289 KSMQILRMHDCESKC*PSNRVADSYHRSDKSHRERC----GQRYRVSHH 155
K + ++ + + PS+ AD R + RE C +R R SHH
Sbjct: 85 KPIAVVTLGEAAGSALPSSLAADPCERGAERRRESCERGRDRRIRTSHH 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,782,167
Number of Sequences: 37544
Number of extensions: 215383
Number of successful extensions: 587
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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