Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P18
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    26   6.1  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    26   6.1  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z73906-10|CAB54209.1|  530|Caenorhabditis elegans Hypothetical p...    26   8.1  
Z73906-9|CAA98121.1|  571|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical
           protein T10B10.2 protein.
          Length = 422

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +1

Query: 7   GAHVVGNAGRTISRRAMRVTGLDPAGP------TWGGNNLALNQQ-SGQYVEAIHTDGGL 165
           G    GN  + ++ +A+ +T L  + P      T G    A+ Q  S    +A+H D GL
Sbjct: 256 GEGAAGNNTKALATQAVLLTALGNSSPVKFNTGTTGVIAKAVGQNGSASAFQAVHADSGL 315

Query: 166 LGIF 177
            G++
Sbjct: 316 AGVY 319


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 256 ESKC*PSNRVADSYHRSD--KSHRERCGQRYRVSH 158
           +S C   + V     RS   ++HRERC + YR+ H
Sbjct: 529 QSSCYVFHSVTSICFRSQAGRAHRERCLEYYRICH 563


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 226  QPGCWVSTCSHSRAYEVFAS 285
            Q G  VSTCSHS  YE + S
Sbjct: 1199 QYGVDVSTCSHSMHYECYRS 1218


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 145 IHTDGGLLGIFDRIAHGDFYPNGGRN 222
           +HTDGG  G  D   H D + +GG +
Sbjct: 37  VHTDGGHHGHMDTHHHHDSHHHGGHH 62


>Z73906-10|CAB54209.1|  530|Caenorhabditis elegans Hypothetical
           protein D2030.9b protein.
          Length = 530

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 218 GIRNPVAGSALALTVVHTKYLHRLVRTN 301
           G+  PVAG    +T+     LH LVR N
Sbjct: 378 GLCQPVAGDTSVMTLRGHSVLHTLVRAN 405


>Z73906-9|CAA98121.1|  571|Caenorhabditis elegans Hypothetical
           protein D2030.9a protein.
          Length = 571

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 218 GIRNPVAGSALALTVVHTKYLHRLVRTN 301
           G+  PVAG    +T+     LH LVR N
Sbjct: 419 GLCQPVAGDTSVMTLRGHSVLHTLVRAN 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,943,229
Number of Sequences: 27780
Number of extensions: 166341
Number of successful extensions: 381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)