Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P17
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    27   1.4  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   1.9  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.5  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   3.3  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 198 LRASELQQDSSPKSFRSILSTVRYHRLSSQL 290
           LRAS +   S P  FRS L  +    LSS++
Sbjct: 137 LRASSIDNSSDPAKFRSDLENIARTTLSSKI 167


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 179 YSYLAISSSIRIATGFVAEVLSVNSFHRQIPPAFFAITRIVLSEIKSQRKTKTNFK*TST 358
           YS L I   IR      ++V+S  S ++    + F I      E KS  + ++  K  + 
Sbjct: 219 YSDLPIEGEIRQFMNSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGENESGGKLKNK 278

Query: 359 CSTLPRRKLV 388
            STL RRK +
Sbjct: 279 MSTLFRRKTI 288


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 144 PRRRCNEEYGTTTHIWQFLRASELQQDSSPKSFRSILSTVRYHRLSSQL 290
           P R C E   T       L+ SEL ++ S    ++  ST+ Y   S+++
Sbjct: 490 PERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRV 538


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 262 SDTTGFLRNYADRVIGNKITAEDENKF 342
           +D   F+R+YA+R++ N    ED+N F
Sbjct: 89  NDIKNFIRSYAERIVNN----EDKNVF 111


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 115 LYKMSLIPLNHVDDVMKNME 174
           L ++ LIP +HVDD+ K +E
Sbjct: 89  LERIQLIPCSHVDDLEKIVE 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,238
Number of Sequences: 5004
Number of extensions: 37813
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)