Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P17
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 36 0.016
01_07_0225 - 42126650-42127020,42127057-42127150,42127229-421275... 34 0.066
04_03_0213 + 12709396-12709564,12709659-12710217,12710312-127106... 31 0.35
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 1.9
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 28 3.3
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 27 7.5
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 27 7.5
09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094 27 7.5
02_05_0917 - 32714156-32714319,32714400-32714457,32714548-327146... 27 7.5
06_03_1347 - 29492460-29494685 27 10.0
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241... 27 10.0
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 27 10.0
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 35.9 bits (79), Expect = 0.016
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 100 YSIEDLYKMSLIPLNHVDDVMKNMERLLISGNFFEHPNCNRIRRRSPFGQFFPPSDTTGF 279
Y +++ K+ L P+ H++D +K + LI E C+R+ R+ Q P +T
Sbjct: 737 YQAQEVLKLELNPMCHIEDALKTLRCPLICFYAVEFQMCHRVMRQFGRLQTIPHRFSTSI 796
Query: 280 LRNYADRVIGNKIT 321
+ DR K+T
Sbjct: 797 DLHKVDRRKNKKVT 810
>01_07_0225 -
42126650-42127020,42127057-42127150,42127229-42127523,
42127604-42127809,42127898-42127945,42128078-42128296
Length = 410
Score = 33.9 bits (74), Expect = 0.066
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +1
Query: 100 YSIEDLYKMSLIPLNHVDDVMKNMERLLISGNFFEHPNCNRIRRRSPFGQFFPPSDTTGF 279
Y +++ ++ + P+ H++D ++ + LI E CNRI R+ Q P +T
Sbjct: 95 YEAQEVVELDINPMCHIEDTLQTLRCPLICFYAVEFQLCNRIMRQFGRLQTIPHRFSTSI 154
Query: 280 LRNYADRVIGNKIT 321
+ DR K+T
Sbjct: 155 DLHKVDRRKNKKVT 168
>04_03_0213 +
12709396-12709564,12709659-12710217,12710312-12710606,
12710688-12710786,12710864-12711203,12711571-12711812
Length = 567
Score = 31.5 bits (68), Expect = 0.35
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 100 YSIEDLYKMSLIPLNHVDDVMKNMERLLISGNFFEHPNCNRIRRRSPFGQFFPPSDTTGF 279
Y +++ ++ L P+ H++D +K + LI E C+R+ R+ Q P +T
Sbjct: 180 YQAQEVLELELNPMCHIEDALKTLRCPLICFYAVEFQMCHRVMRQFGRLQTIPHRFSTSI 239
Query: 280 LRNYADRVIGNKIT 321
+ D K+T
Sbjct: 240 DLHKVDLRKNKKVT 253
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 168 YGTTTHIWQFLRASELQQDSSPKSFRSILSTVRYHRLSSQLR 293
+G+ T + ++ A+E + S +F+SI+ TVR++ + LR
Sbjct: 70 FGSDTFLMEWATANEKLKPLSAYTFKSIMVTVRFYGIPMALR 111
>07_03_1732 +
29109612-29110623,29110712-29110786,29111176-29111333,
29111714-29111937,29112136-29112745
Length = 692
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 91 FTRYSIEDLYKMSLIPLNHVDDVMKNME 174
FTR +++DL+ L+ + +D + KN+E
Sbjct: 446 FTRATVKDLHSRILVAIQKIDFISKNIE 473
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 139 LNHVDDVMKNMERLLISGNFFEHP 210
L H+ + +ERL +SGN F HP
Sbjct: 233 LTHLHNNFTRLERLDLSGNQFNHP 256
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 144 PRRRCNEEYGTTTHIWQFLRASELQQDSSPKSFRSILS 257
P R C E+GT H+W+F E Q+++ KS + +++
Sbjct: 195 PLRGC--EFGTILHVWEF----EQQRETGAKSTQQLVN 226
>09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094
Length = 326
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 226 ESCCNSDARRNCQI*VVVPYSSLHRRRGSEESTTFYINLQS 104
E D R++C++ V SL G EE+ T +NLQS
Sbjct: 211 EDSWEGDWRKDCELHVSDISGSLPELLGDEEARTAQLNLQS 251
>02_05_0917 -
32714156-32714319,32714400-32714457,32714548-32714618,
32715280-32715403,32715511-32715582,32715675-32715950
Length = 254
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 205 HPNCNRIRRRSPFGQFFPPSDTTGFLRNYADRVIGNKITAEDENKFQVNIDVQHFAP 375
HP C + +SPFG P + A R++G K+ DE ++ +V+ + P
Sbjct: 44 HPACTAVSLQSPFGPALPRDFFEVDALDLAPRLLG-KLLRRDEVVLRIT-EVEAYRP 98
>06_03_1347 - 29492460-29494685
Length = 741
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 168 ILHYIVDVVQRNQRHFI*IFNRITREQTLYICAFQY 61
IL Y V + N R +I FN++ R+ C F+Y
Sbjct: 585 ILKYNVASEEENGRGYIVSFNQLDRKAECTCCKFEY 620
>05_05_0051 +
21923402-21923763,21923861-21923951,21924048-21924196,
21924279-21924522,21924664-21924768,21924842-21925024,
21925118-21925319,21925896-21926372,21926680-21926771,
21927265-21927444
Length = 694
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 133 IPLNHVDDVMKNMERLLISGNFFEHP 210
IP++ +DD ++ + R+ FEHP
Sbjct: 340 IPMSRIDDAVERILRVKFISGVFEHP 365
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 359 CSTLPRRKLVSKSLMVSWLSKVSTKNKCD 445
CS LP+ KL+S+ SW+ + S N CD
Sbjct: 111 CSGLPQIKLLSRFRRSSWV-RTSEYNGCD 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,216,758
Number of Sequences: 37544
Number of extensions: 241594
Number of successful extensions: 631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -