Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P16
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    75   4e-15
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   2.7  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   6.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    24   8.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   8.2  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    24   8.2  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 74.9 bits (176), Expect = 4e-15
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
 Frame = +1

Query: 103 IDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFISTVSSFVLGVCLRLQVNPE------ 264
           IDA+L ++ +   +QF Y  LVGT+PFNSFLSGFIS V  FV+ V  R+ +  +      
Sbjct: 29  IDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVGQFVITVGFRMALTQQELQSSS 88

Query: 265 NKTEFQGLSA-ERGFADFIFAHLVLHIVVINFIG 363
           +K +   +S  +R F +F F+ LVLH   +NF+G
Sbjct: 89  SKKKSPVVSPYKRAFLEFCFSSLVLHFFAVNFLG 122


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +3

Query: 150 RLLLPCRH---ISLQLFFEWFYFYCQFI--CSRSMPETSSEPGEQD*VP 281
           RL LP  H    +++ FF WF+F+  F   C R        P + + VP
Sbjct: 58  RLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVP 106


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 329 KCANMKSAKPRSALNPWN 276
           K   +K  +P S LNPWN
Sbjct: 60  KYGAIKVVRPSSVLNPWN 77


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +1

Query: 247 LQVNPENKTEFQGLSAERGFADFIFAHLVLHIVVIN 354
           L++ PE+K E++GL +E   AD + ++L+  +  +N
Sbjct: 373 LRLLPEDKEEYEGLRSE---ADKLNSNLLFKLQTLN 405


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/40 (22%), Positives = 16/40 (40%)
 Frame = +1

Query: 52  PKLYQEYXXXXXXXXXIIDAYLLYVFLTAVIQFAYCCLVG 171
           PK+              +D YL Y+ ++ +   AY   +G
Sbjct: 557 PKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLG 596


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 184 NSFLSGFISTVSSFVLGVCLRLQVNPEN-KTEFQGLSAE 297
           +SFLSGFI ++      V +    NP+N KT+    SAE
Sbjct: 105 DSFLSGFIKSLLEIDSSVVIYNTENPDNPKTKQVMPSAE 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,697
Number of Sequences: 5004
Number of extensions: 25804
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)