Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P16
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088...   108   2e-24

>04_03_0783 +
           19607871-19607951,19608027-19608074,19608719-19608806,
           19608887-19608930,19609016-19609099
          Length = 114

 Score =  108 bits (259), Expect = 2e-24
 Identities = 49/88 (55%), Positives = 67/88 (76%)
 Frame = +1

Query: 100 IIDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFISTVSSFVLGVCLRLQVNPENKTEF 279
           IID Y+++   TA+IQ  Y  +VG+FPFNSFLSG +S + + VL VCLR+QVN +NK EF
Sbjct: 28  IIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNK-EF 86

Query: 280 QGLSAERGFADFIFAHLVLHIVVINFIG 363
           + L  ER FADF+  +LVLH+V++NF+G
Sbjct: 87  KDLPPERAFADFVLCNLVLHLVIMNFLG 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,288
Number of Sequences: 37544
Number of extensions: 141917
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)