Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P16
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89080-1|CAA61451.1| 113|Caenorhabditis elegans dad-1 protein. 149 6e-37
AF039713-4|AAB96727.1| 113|Caenorhabditis elegans Dad (defender... 149 6e-37
U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical pr... 31 0.44
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 28 2.4
AF016688-2|AAB66078.1| 649|Caenorhabditis elegans Hypothetical ... 28 3.1
Z79600-9|CAJ85761.1| 110|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z79600-8|CAJ85760.1| 147|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 27 7.2
U23170-2|ABD63218.1| 150|Caenorhabditis elegans Hypothetical pr... 26 9.5
>X89080-1|CAA61451.1| 113|Caenorhabditis elegans dad-1 protein.
Length = 113
Score = 149 bits (362), Expect = 6e-37
Identities = 65/111 (58%), Positives = 83/111 (74%)
Frame = +1
Query: 31 SSITAVVPKLYQEYXXXXXXXXXIIDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFIS 210
+ + V+ KL+ +Y IIDAY+ Y+ T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3 AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62
Query: 211 TVSSFVLGVCLRLQVNPENKTEFQGLSAERGFADFIFAHLVLHIVVINFIG 363
TV+SFVL CLR+QVN EN++EF +S ER FADFIFA+L+LH+VV+NF+G
Sbjct: 63 TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILHLVVVNFLG 113
>AF039713-4|AAB96727.1| 113|Caenorhabditis elegans Dad (defender
against apoptoticdeath) homolog protein 1 protein.
Length = 113
Score = 149 bits (362), Expect = 6e-37
Identities = 65/111 (58%), Positives = 83/111 (74%)
Frame = +1
Query: 31 SSITAVVPKLYQEYXXXXXXXXXIIDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFIS 210
+ + V+ KL+ +Y IIDAY+ Y+ T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3 AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62
Query: 211 TVSSFVLGVCLRLQVNPENKTEFQGLSAERGFADFIFAHLVLHIVVINFIG 363
TV+SFVL CLR+QVN EN++EF +S ER FADFIFA+L+LH+VV+NF+G
Sbjct: 63 TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILHLVVVNFLG 113
>U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical
protein D2096.5 protein.
Length = 137
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +1
Query: 115 LLYVFLTAVIQFAYCCLVGTFPFNSFLSGFISTVSSFV 228
LL VF+ + LV TF FN FLS +STV FV
Sbjct: 8 LLSVFIFLLFSSEVEALVTTFHFNGFLSCGLSTVDFFV 45
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 139 VIQFAYCCLVGTFPFNSFLSGFISTVSSFVLGVCLRLQVNPENK 270
+IQ + ++G F F + FI ++ F+LG CL ++ P +K
Sbjct: 12 LIQKSEYFIIGVFLI--FRTAFIFIITGFILGYCLHVKDPPSDK 53
>AF016688-2|AAB66078.1| 649|Caenorhabditis elegans Hypothetical
protein F18A12.6 protein.
Length = 649
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 228 NK*TDSRNKTTQKRVEGKCADKATISELN 142
NK + S+++ T K+V KC + IS+LN
Sbjct: 140 NKTSTSKSENTMKQVYAKCRELQKISDLN 168
>Z79600-9|CAJ85761.1| 110|Caenorhabditis elegans Hypothetical
protein F59C6.14b protein.
Length = 110
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 103 IDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFIS 210
IDA + +T ++ AYC G F +L GF+S
Sbjct: 75 IDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 109
>Z79600-8|CAJ85760.1| 147|Caenorhabditis elegans Hypothetical
protein F59C6.14a protein.
Length = 147
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 103 IDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFIS 210
IDA + +T ++ AYC G F +L GF+S
Sbjct: 112 IDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 146
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 111 LPTLCVFNRRNSVRLLLPCRHIS-LQLFFEWFYFYCQFICSRSMPETSSEPGEQD*VPRV 287
L + V NS+RL++ I Q+FFE+F ++I S + + + +P++
Sbjct: 268 LKNIFVTGTDNSIRLMMQKYLIDEQQIFFEYF----EYIFDESASTSYNFQSIVENLPKL 323
Query: 288 EC*ARLCRFHIC 323
CRF IC
Sbjct: 324 NIHDASCRFQIC 335
>U23170-2|ABD63218.1| 150|Caenorhabditis elegans Hypothetical
protein F58F12.4 protein.
Length = 150
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 154 YCCLVGTFPFNSFLSGFISTVSSFVLGVCLRLQVNPENKTE 276
YCC SFL+ I +S F++G C+R + + KT+
Sbjct: 102 YCCEHIQTWLLSFLAVIIVFLSIFLIGCCVRCCCSYKRKTQ 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,926,035
Number of Sequences: 27780
Number of extensions: 145886
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -