Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P16
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   3.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   5.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    20   9.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.7  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 276 LSLVLRVHLKSQAYS*NK*TDSRNKTTQKRVEGKCADKATISELNYG 136
           L L++ + L     S N   D R  T  + ++GK  + A+++  N+G
Sbjct: 7   LLLMVSITLVIAEESDNVLFDKRAPTGHQEMQGKEKNSASLNSENFG 53


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 90  KTEDNRCLPTLCVFNRRN 143
           + ++ + LPT CVF R N
Sbjct: 29  RKKNKKPLPTECVFCRNN 46


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 166 VGTFPFNSFLSGFISTVSSFVLGVCLRLQVNPENKTEFQGLSA 294
           V ++PF   ++   + + + V   C R+ +NP +K   Q +S+
Sbjct: 317 VPSYPFEEDINEGSNYMQTRVPAWCDRVLLNPTDKMLVQDISS 359


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 157 NKRTELRRLKTHKVGKHRLSS 95
           N+R + +RL+  ++ K RLS+
Sbjct: 59  NRRAKAKRLQEAEIEKLRLSA 79


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 147 VRLLLPCRHISLQLFFEWFY 206
           V+LLL  +HIS Q+  E  Y
Sbjct: 34  VKLLLQVQHISKQISEEQRY 53


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 147 VRLLLPCRHISLQLFFEWFY 206
           V+LLL  +HIS Q+  E  Y
Sbjct: 34  VKLLLQVQHISKQISEEQRY 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,965
Number of Sequences: 438
Number of extensions: 1849
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)