Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P15
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    27   0.85 
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   2.6  

>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = -1

Query: 195 ILYYVFIQYIYNKIFSVL*FYCIFVILFYRYVFESNKTIERSKTPNEQQDLRNLNYIRS* 16
           +L Y ++ Y+Y+K    +  Y     +  R   E + T E + + + ++ +   +Y+R  
Sbjct: 221 LLVYKYMMYVYDKWIFHIPLYFTVDYVSERLRSEVDFTTEANNSEHAREGVEETDYLRDK 280

Query: 15  IYL 7
           IY+
Sbjct: 281 IYI 283


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -1

Query: 210  LSYP*ILYYVFIQYIYNKIFSVL*FYCIFVI 118
            L  P  ++++F++Y+++  F V+ F C  ++
Sbjct: 1006 LKLPWAVFHIFLRYLFSHSFLVIIFACSVIL 1036


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,634
Number of Sequences: 5004
Number of extensions: 30669
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)