Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P15
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    28   2.3  
Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.     27   3.9  
AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans alkyl-dihydro...    27   5.2  
AC024801-10|AAK68514.1|  597|Caenorhabditis elegans Alkyl-dihydr...    27   5.2  
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    26   9.1  
AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...    26   9.1  

>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 183 VFIQYIYNKIFSVL*FYCIFVILFYRYVFESNKTIERSK 67
           + I YI+  +F+ L  + + +   Y YVF++N+  ER K
Sbjct: 26  ILINYIFISVFATLVAFNLVLFTLYVYVFKTNR--ERDK 62


>Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical
           protein F44F4.7 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 309 IFNYNGTEFIM*KHKKNIPNHIRFHLII 226
           +F Y+G   +M K+++NIP  I F++I+
Sbjct: 246 MFMYSGGVLLMRKNRENIPTLIYFNVIV 273


>AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 309 IFNYNGTEFIM*KHKKNIPNHIRFHLII 226
           +F Y+G   +M K+++NIP  I F++I+
Sbjct: 246 MFMYSGGVLLMRKNRENIPTLIYFNVIV 273


>AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans
           alkyl-dihydroxyacetonephosphatesynthase protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 3   ARGIFKNEYNLDYEDLVVHLEFL 71
           A G+ KN+Y  + EDLVVHL F+
Sbjct: 247 ASGMKKNKYG-NIEDLVVHLNFV 268


>AC024801-10|AAK68514.1|  597|Caenorhabditis elegans
           Alkyl-dihydroxyacetonephosphatesynthase protein 1
           protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 3   ARGIFKNEYNLDYEDLVVHLEFL 71
           A G+ KN+Y  + EDLVVHL F+
Sbjct: 247 ASGMKKNKYG-NIEDLVVHLNFV 268


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +3

Query: 12  IFKN-EYNLDYEDLVV-HL--EFLNVQSFY*IRRRTYK 113
           + KN E N +Y+ L V HL  E +NVQ    +RRRTY+
Sbjct: 68  LLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYR 105


>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +3

Query: 12  IFKN-EYNLDYEDLVV-HL--EFLNVQSFY*IRRRTYK 113
           + KN E N +Y+ L V HL  E +NVQ    +RRRTY+
Sbjct: 96  LLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYR 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,015
Number of Sequences: 27780
Number of extensions: 158278
Number of successful extensions: 369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)