Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P15
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   4.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   4.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   4.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   4.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   4.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   5.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   5.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.4  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  SNKTIERSKTPNEQQDLRNLNYI 25
           SNKTI  +    ++    N+NYI
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYI 108


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  SNKTIERSKTPNEQQDLRNLNYI 25
           SNKTI  +    ++    N+NYI
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYI 108


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  SNKTIERSKTPNEQQDLRNLNYI 25
           SNKTI  +    ++    N+NYI
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYI 108


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  SNKTIERSKTPNEQQDLRNLNYI 25
           SNKTI  +    ++    N+NYI
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYI 108


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  SNKTIERSKTPNEQQDLRNLNYI 25
           SNKTI  +    ++    N+NYI
Sbjct: 319 SNKTIHNNNNNYKKLQYYNINYI 341


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 231 IINNKNYLSYP*ILYYVFI 175
           I NN NY +Y   LYY  I
Sbjct: 323 IHNNNNYKNYNKKLYYNII 341


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 111 YRYVFESNKTIERSKTPNEQQDLRN 37
           Y +  E    +ERSKT ++  + R+
Sbjct: 70  YSHTHEKKLVLERSKTKSKSPESRD 94


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 113 FIGTSSNLIKRLNVQKLQMNNK 48
           F+G ++NLI+ L+  + Q   K
Sbjct: 370 FLGHATNLIQSLDSSRRQYREK 391


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 283 HYVKT*KKYSKSHTVSLNN 227
           +Y+ + ++YS+SH +S  N
Sbjct: 337 YYMYSREQYSQSHLISNEN 355


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 113 FIGTSSNLIKRLNVQKLQMNNK 48
           F+G ++NLI+ L+  + Q   K
Sbjct: 338 FLGHATNLIQSLDSSRRQYREK 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,739
Number of Sequences: 438
Number of extensions: 2347
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)