Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P14
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1053 - 10840558-10841085,10841363-10841528,10841571-108417... 33 0.11
02_01_0035 - 220036-221419,222050-222801 32 0.26
06_01_0465 - 3304417-3306834 30 1.1
02_05_0980 - 33271879-33271934,33272031-33272100,33272194-332723... 30 1.1
01_03_0055 + 12074512-12076155 29 1.4
01_06_1449 - 37444769-37446190 29 1.9
01_01_0816 + 6360526-6360802,6360902-6361117,6361231-6361379,636... 28 3.3
08_02_1011 - 23544917-23544964,23545334-23545822,23546661-235470... 28 4.3
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 27 5.7
11_05_0070 + 18818127-18818404,18818492-18818532,18818691-188189... 27 10.0
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 27 10.0
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 27 10.0
05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531 27 10.0
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 27 10.0
04_04_0886 - 29089083-29089211,29089702-29089890,29089968-290901... 27 10.0
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 27 10.0
>12_01_1053 -
10840558-10841085,10841363-10841528,10841571-10841787,
10842321-10842420
Length = 336
Score = 33.1 bits (72), Expect = 0.11
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -3
Query: 235 RPQHHKHHYLVQRLP 191
RP HH+HH+L+QRLP
Sbjct: 211 RPLHHRHHHLLQRLP 225
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 280 KVGPAFLYQQLWNGKRPQHHKHHYLVQRLPHQRISYHG 167
++G F YQ L + PQHH HH+ ++P + G
Sbjct: 48 ELGAPFRYQPLHHHALPQHHHHHHPPPQMPPHLAHFGG 85
>06_01_0465 - 3304417-3306834
Length = 805
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -3
Query: 376 SSRCQLVPRTRCIC-ESYAAHGPSSWPR*DPSCKVGPAFLYQQLWNGKRPQHHKHHYLVQ 200
+S C P RC C E + P W + S K + WN H ++ +
Sbjct: 298 NSLCIYKPDPRCSCLEGFEMVKPGDWSQ-GCSYKANATLI----WNNNANSKSNHGFIFK 352
Query: 199 RLPHQRISYHGY*TNH 152
++PH ++GY N+
Sbjct: 353 KIPH--TDFYGYDLNY 366
>02_05_0980 -
33271879-33271934,33272031-33272100,33272194-33272355,
33272787-33272895,33273350-33273608,33274193-33274272,
33274370-33274499,33274676-33274793,33275222-33275302,
33275510-33275827,33277490-33277741
Length = 544
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 286 TDLIEANSMGHEPHKIHIYSASWGPTDNGRTVDGPRNAT 402
+++ +++ H+ +IH+ AS D T+DG RNAT
Sbjct: 161 SNIFSSSAYDHDIDQIHVIVASLYQKDAEETIDGIRNAT 199
>01_03_0055 + 12074512-12076155
Length = 547
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 292 DPSCKVGPAFLYQQLWNGKRPQHHKHHY 209
D +VGP ++++ G R HH HH+
Sbjct: 339 DDDDEVGPGMKSRRIYGGHRVHHHHHHH 366
>01_06_1449 - 37444769-37446190
Length = 473
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 91 NAEASYDFSSNDPFPYPRYT-DDWFNSHGTRCAGEVAAARDNGVCGVGVAYHSKVAGIR 264
+AEA+ D SND PY R D+ F+ +R E +R + V AY + A R
Sbjct: 79 HAEATIDLPSNDLRPYLRRAYDEAFSRELSRLLQETGPSRPDWVLADYAAYWAPAAASR 137
>01_01_0816 +
6360526-6360802,6360902-6361117,6361231-6361379,
6361474-6361750,6362228-6362457
Length = 382
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 79 KYNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCA-GEVAA 201
+YNYNA A+ + P P + +W H T A G +AA
Sbjct: 323 RYNYNATAACGLAGATACPDPAASINWDGVHLTEAAYGRIAA 364
>08_02_1011 -
23544917-23544964,23545334-23545822,23546661-23547054,
23548707-23549104
Length = 442
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 337 CESYAAHGPSSWPR*DPSCKVGPAFLYQQLWNGKRP 230
C+ AAHG + W R PAFL ++ GK P
Sbjct: 103 CDGGAAHGATEWRR--HRAWAAPAFLRRERRRGKSP 136
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Frame = -3
Query: 259 YQQLWNGKRPQ---HHKHHY 209
Y+++ NGKRP HH+HH+
Sbjct: 1300 YEKVRNGKRPHKTGHHRHHH 1319
>11_05_0070 +
18818127-18818404,18818492-18818532,18818691-18818990,
18820005-18820757,18820840-18820889
Length = 473
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 277 PYMTDLIEANSMGHEPHKIHIYSASWGPTDNGRTVDGP 390
P D ++ +GH+ H+ S + G T + VDGP
Sbjct: 432 PMYMDEMQGRRLGHQAHRSTRDSDNLGATSSRTHVDGP 469
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 64 MHPDLKYNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVAAAR 207
M + NA YD + P +P T W SH +R G + R
Sbjct: 16 MEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSH-SRSPGSARSHR 62
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 397 RFLAHPLSSRCQLVPRTRCICESYAAHGPSSWP 299
R+LA +S C++ R C YAA+ P+ P
Sbjct: 63 RWLATRRTSHCEVCKRLISTCPLYAANAPARLP 95
>05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531
Length = 588
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 264 SYTSNFGMVSDPNTTNTIISCSGYLTSASRTMAIKPIISVSRVGEWIVT-TKIVRRFSVV 88
S ++FG V D + CS ++ +AS +P +SV V ++VT + + +
Sbjct: 501 SVKADFGAVMDVLKKRLKVPCSWHMNTASICSECRPCLSV--VLNFLVTFHPYLVKAGKL 558
Query: 87 IILQIRMH 64
II++ +MH
Sbjct: 559 IIVECKMH 566
>04_04_1192 +
31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 297 DEIRHVRLVQHSYTSNFGMVSDPNTTN 217
+E R RL+ Y N +V D +TTN
Sbjct: 790 EEARRARLIDKDYLENLCLVWDDSTTN 816
>04_04_0886 -
29089083-29089211,29089702-29089890,29089968-29090121,
29090389-29090489,29090970-29091020,29092606-29092761
Length = 259
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 267 HSYTSNFGMVSDPNTTNTIISCSGYLTSASRTMAIKPIISV 145
HSY + MVS S SG+LT T A K + S+
Sbjct: 115 HSYLGSAEMVSSLEILGCYFSLSGFLTGMKSTKAKKMLKSM 155
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 370 RCQLVPRTRCICESYAAHGPSSWPR*DPSCKVGPA 266
RC L R R ++ A S P + CK+GPA
Sbjct: 126 RCLLARRARRRYSTHQAFTASPMPEMERRCKIGPA 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.136 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,298
Number of Sequences: 37544
Number of extensions: 354272
Number of successful extensions: 1096
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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