Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P11
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   1.0  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    27   1.3  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   2.3  
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    25   7.1  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   7.1  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   9.4  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    24   9.4  

>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 290 FPIVLFLWVIDILIGYNSVPVSLHLQVIYDCTVVKLLH 403
           FP+VL L+ + ++ G  S  + LHL VI    V  LLH
Sbjct: 14  FPLVLRLFFL-VVFGLYSFTLILHLLVINRVDVFSLLH 50


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 242 FNPLSTYLAFTSAFHCFPIVLFLWVIDILIGYNSVPVSLHLQVIYDCTVV 391
           F+P++  LA     + F   LF+W   +  G+   PV++ L +   C V+
Sbjct: 246 FHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVL 295


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 290 FPIVLFLWVIDILIGYNSVPVSLHL 364
           FPI LFLW++ + + +  +    H+
Sbjct: 320 FPITLFLWMLAVYVSFLPIMTRRHI 344


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 414 KCYHSCHLFAYP 449
           K + SCHLF YP
Sbjct: 2   KIFESCHLFQYP 13


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 329 IGYNSVPVSLHLQVIYDCTV 388
           IG  +VP+S HL  I+D ++
Sbjct: 146 IGLENVPISFHLTSIFDHSI 165


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 404 YAITLLLCNHISLVNVN*PVQSYSLLICRLP 312
           Y I   L  H S+ +    + + SLL+C LP
Sbjct: 161 YDIAFSLYTHFSIYSCAEKISNTSLLLCTLP 191


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 393 FTTVQSYITCKCKLTGTEL 337
           F TV+S + CKC+++G  L
Sbjct: 198 FGTVKSDMECKCQISGMPL 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,715
Number of Sequences: 5004
Number of extensions: 33234
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)