Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P11
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0486 - 3699290-3699296,3699485-3699745,3699889-3700046,370... 28 3.0
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 28 4.0
08_02_1279 - 25841767-25842017,25842181-25842418,25842685-258430... 27 5.3
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 27 7.0
05_04_0196 - 18964927-18965218,18965337-18965503,18966182-189663... 27 7.0
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 27 9.2
02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967... 27 9.2
>03_01_0486 -
3699290-3699296,3699485-3699745,3699889-3700046,
3700265-3700469,3701285-3701574,3701648-3701810,
3701897-3701985,3702086-3702153,3702560-3702722
Length = 467
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 111 FILFFS*KRFSYS-YNGSIKITH*NRIAKPLCRDK 10
FI ++ K S++ + S++ TH NR+ +P CR K
Sbjct: 397 FIDLYNNKTISWNNFASSVQETHRNRVVQPSCRQK 431
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.9 bits (59), Expect = 4.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = +2
Query: 293 PIVLFLWVIDILIGYNSVPVSLHLQVIYDCTV 388
P+ + +++GY +P+S H+Q++ D ++
Sbjct: 569 PVCFLFLITKVVVGYAVLPLSTHIQLLSDVSL 600
>08_02_1279 -
25841767-25842017,25842181-25842418,25842685-25843018,
25843498-25843592,25845461-25845700
Length = 385
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 160 YYLYQCLSNTYTEAQKKTDLK*Y*QIVF*PLEHLPGVYVSFPL 288
Y++Y+ + +Y A KK L ++ L L +SFPL
Sbjct: 271 YFMYETIKTSYCRAHKKKSLSRPELLIIGALSGLTASTISFPL 313
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 160 YYLYQCLSNTYTEAQKKTDLK*Y*QIVF*PLEHLPGVYVSFPL 288
Y++Y + +Y KKT L +V L L +SFPL
Sbjct: 275 YFMYDTIKTSYCRLHKKTSLTRPELLVIGALSGLTASTISFPL 317
>05_04_0196 -
18964927-18965218,18965337-18965503,18966182-18966328,
18966419-18966650,18968087-18968241
Length = 330
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 283 ES*RKRQVSA--QGVKKQSVNIILGQFFFGPLYMYYLNIGTSSNGAEKL 143
E+ +KRQ+ + QG+K +++ + QF + Y Y+ + +GA+ +
Sbjct: 60 EAVQKRQILSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSI 108
>03_01_0307 +
2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 239 FFNPLSTYLAFTSAFHCFPIVLFLWVIDILIGYNSVPVSLHLQVI 373
FF+ +L FT+ F+ +LW +DILI Y ++ ++QV+
Sbjct: 341 FFDYEKVFLMFTTQFY------WLWTLDILIDYGH--LTTYMQVV 377
>02_03_0285 -
17296164-17296203,17296406-17296524,17296572-17296742,
17298878-17298985,17299783-17299905,17300057-17300143,
17300765-17300884
Length = 255
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 405 ICNNFTTVQSYITCKCKLTGTEL*PINMSI 316
ICNN+ ++ C L G +L P NM I
Sbjct: 209 ICNNYFVFRTDKACDAFLDGLKLDPANMEI 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,994,599
Number of Sequences: 37544
Number of extensions: 167110
Number of successful extensions: 289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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