Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P10
         (265 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    26   0.99 
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    25   1.3  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   1.3  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    24   3.0  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    23   7.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    23   7.0  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    23   9.2  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    23   9.2  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 240 RPITEDEKNF*AYQYLRGARSICQTCG 160
           +PITE+ KNF A+  L   R+  +  G
Sbjct: 164 KPITEEAKNFNAFSTLSNERAYARYAG 190


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 90  HSCRCFSDIIRI 125
           H+CRCF  ++RI
Sbjct: 63  HTCRCFQQVVRI 74


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -3

Query: 257 HQNLLLDPSLRMRRTSKLINTLEELVL--FAK-LVGIRAKRLKDSAENPDD 114
           HQ LLL+  +R+RR +  IN  ++  L  F K L+ I +  +  + ENPD+
Sbjct: 84  HQTLLLEKEVRVRRNA--INQRDDSFLSGFIKSLLEIDSSVVIYNTENPDN 132


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 10  ERLVSSFLFFFLTEFIYNNHFYGLV 84
           ++L+SSFL+F +  F  N H   L+
Sbjct: 497 KKLLSSFLYFLINNFNDNLHIIELL 521


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 125 FLPNPSVAWLG 157
           FL NP+V WLG
Sbjct: 183 FLVNPTVGWLG 193


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 40  FLTEFIYNNHFYGLVSFTAVGALVTSSG 123
           F    +Y NH YG ++F+     + +SG
Sbjct: 254 FDDRMVYVNHVYGYMTFSKEKTYLLASG 281


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 122 DFLPNPSVAWLGCPQVW 172
           + +P    A+L CP+VW
Sbjct: 489 EIVPAKERAYLSCPKVW 505


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 263 RQHQNLLLDPSLRMRRTSKLINTLEEL 183
           ++H  + +DP+L  R   K +   EEL
Sbjct: 35  QEHSRMRIDPALERRLERKRMEAEEEL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 977,679
Number of Sequences: 5004
Number of extensions: 15676
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)