Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P10
(265 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 30 0.29
11_01_0047 + 358370-360107,360713-361353 29 0.39
04_03_0008 + 9296711-9298096 28 1.2
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411... 27 2.7
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636... 27 2.7
09_06_0291 - 22066550-22067610,22067721-22067975,22068093-220682... 26 3.6
02_02_0447 + 10363077-10363245,10363419-10363519,10363947-103641... 26 3.6
08_01_1047 - 10616113-10616669,10616727-10616953,10617564-106176... 26 4.8
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 25 6.3
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762... 25 8.3
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 29.9 bits (64), Expect = 0.29
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = -3
Query: 251 NLLLDPSLRMRRTSKLINTLEELVLFAKLVGIRAKRLKDSAENPDDVTKAPTAVKETKP 75
N L+D + R S+LIN L++L KL+G+ ++DS PDD+ PT E +P
Sbjct: 771 NQLMDTHAK-GRLSRLINILDKL----KLIGLLNGYIEDSNVQPDDL---PTHSLELRP 821
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 29.5 bits (63), Expect = 0.39
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 52 FIYNNHFYGLVSFTAVGALVTSSGFSAESFSRLARMPTSLANRT 183
+++NN F G V ++G V F A + +P+SLAN T
Sbjct: 146 YLFNNRFSGAVP-ASIGNCVALQAFDASNNLLTGAIPSSLANST 188
>04_03_0008 + 9296711-9298096
Length = 461
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 227 RMRRTSKLINTLEELVLFAKLVGIRAKRLKDSAENPDDVTKA 102
R++ + I+T++E L A + + KRL D P D KA
Sbjct: 96 RLQTRQQGIHTVKETELLAAKLDLLMKRLDDHDNRPQDTVKA 137
>11_01_0524 -
4115125-4115491,4116096-4116180,4116796-4116938,
4117449-4117654,4118650-4118748,4118958-4118993,
4119222-4119276,4119505-4119690,4120572-4120759
Length = 454
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 261 TAPKSVVRPITEDEKNF*AYQYLRGARSICQTCGHPSQAT 142
T+ KS + + DE A + RG + Q GHP+QAT
Sbjct: 91 TSIKSYFKELALDEH---ASSFSRGPAEVYQWIGHPNQAT 127
>10_08_1003 -
22162526-22163155,22163305-22163448,22163565-22163692,
22163794-22164066,22164416-22164689
Length = 482
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 22 SSFLFFFLTEFIYNNHFYGLVSFTAVGALVTSSGFSAESFSRLAR 156
+++L FF + I N+ YG+V F L+T S F E LAR
Sbjct: 95 ATYLRFFPS--IKKNYDYGVVIFLLTFNLITVSSFRQEDVVPLAR 137
>09_06_0291 -
22066550-22067610,22067721-22067975,22068093-22068207,
22068329-22068381,22068467-22068724,22069110-22069160,
22069577-22069822,22070427-22070652,22070984-22071100
Length = 793
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 16 LVSSFLFFFLTEFIYNNHFYGLVSFTAVGALVTSSGFSA 132
LV++FL + ++ +H+ +V+FT + LV FSA
Sbjct: 449 LVTTFLMIPIMLLVWRSHWTLVVAFTVLSLLVEIPYFSA 487
>02_02_0447 +
10363077-10363245,10363419-10363519,10363947-10364140,
10364223-10364634
Length = 291
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 134 NPSVAWLGCPQVWQIERAPLR 196
N +V+W C VW I+ P+R
Sbjct: 144 NYTVSWTACMIVWYIDGTPIR 164
>08_01_1047 -
10616113-10616669,10616727-10616953,10617564-10617649,
10617949-10618080,10618867-10618959
Length = 364
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 31 LFFFLTEFIYNNHFYGLVSFTAVGALV 111
+FFFL I+ G V FT + ALV
Sbjct: 256 IFFFLNSLIWGQKSSGAVPFTTMFALV 282
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 55 IYNNHFYGLVSFTAVGALVTSSGF 126
I N H++ VSFT + V ++G+
Sbjct: 101 ITNKHYWASVSFTGIAGFVLAAGW 124
>09_04_0713 -
19675437-19675551,19675872-19676017,19676226-19676259,
19676333-19676473,19676860-19676924,19677022-19677108,
19677186-19677254,19677457-19677548,19677781-19677853,
19678129-19678205,19678490-19678684,19678804-19678861,
19679423-19679517,19680071-19680191
Length = 455
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 70 FYGLVSFTAVGALVTSSGFSAESFSRL-ARMPTS 168
F GL V L+TS+GFS+ +R PTS
Sbjct: 14 FVGLALGQFVSLLITSTGFSSSELARRGVNAPTS 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,933,287
Number of Sequences: 37544
Number of extensions: 91941
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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