Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P10
         (265 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    28   0.79 
AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical...    28   1.0  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear recep...    26   3.2  
AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    26   4.2  
M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein ( C.ele...    25   5.6  
L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated p...    25   5.6  
Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    25   7.4  
AL021493-7|CAA16389.3|  345|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 25  SFLFFFLTEFIYNNHFYGLVSFTAVGALVTSSGF 126
           +F+FF LT F+++  FY L+    +GA + +SGF
Sbjct: 585 AFVFFCLTIFMFHV-FYVLLLLYMIGASMNASGF 617


>AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical
           protein Y105C5A.22 protein.
          Length = 174

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 37  FFLTEFIYNNHFYGLVSFTAVGALVTSSGFSAESFSRL---ARMPTSLAN 177
           F +T+     +FY  + F+++    TS+ F   SF+RL    RMP    N
Sbjct: 17  FKVTQMSVIGYFYARLMFSSIETTETSTFFEISSFARLLFRRRMPQGNTN 66


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
            protein Y18D10A.1 protein.
          Length = 1634

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 152  AKRLKDSAENPDDVTKAPTAVKET 81
            A R  +SAENPDDVT      K T
Sbjct: 1345 AVRFSESAENPDDVTSPVYQKKST 1368


>Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical
           protein F57A10.5 protein.
          Length = 443

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 134 SAENPDDVTKAPTAVKETKP 75
           SA+ P+D   +PTAVK TKP
Sbjct: 23  SADEPED-EPSPTAVKSTKP 41


>AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear receptor
           NHR-60 protein.
          Length = 442

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 134 SAENPDDVTKAPTAVKETKP 75
           SA+ P+D   +PTAVK TKP
Sbjct: 22  SADEPED-EPSPTAVKSTKP 40


>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 16  LVSSFLFFFLTEFIYNNHFYGLVSFTAVGALVTSSGFSAESFS-RLARMPTSL 171
           L+  FLF+     IY N FY +V    +  LV  S F+   F+ RL + P+ +
Sbjct: 35  LMLFFLFYLGNSKIYTNSFYRIVQ---ISLLVNISCFANTWFAIRLEKHPSCI 84


>M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 429

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 37  FFLTEFIYNNHFYGLVSFTAVGALVTSSGFSAESFSRLARMPTS 168
           F L  F Y+N+F G+   +A   +      S+E F     +PTS
Sbjct: 130 FILFIFSYSNYFSGIHDTSAATNIYQGLPSSSEPFDASVVVPTS 173


>L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated
           protein 86, isoform a protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 37  FFLTEFIYNNHFYGLVSFTAVGALVTSSGFSAESFSRLARMPTS 168
           F L  F Y+N+F G+   +A   +      S+E F     +PTS
Sbjct: 130 FILFIFSYSNYFSGIHDTSAATNIYQGLPSSSEPFDASVVVPTS 173


>Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical
           protein K03B8.2 protein.
          Length = 448

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 187 SSFYLPNLWASEPSD*RIRQKILMMS 110
           +++YL  LW + P+D  I  KI+ +S
Sbjct: 334 TNYYLAYLWITAPADKTIEVKIMDLS 359


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 230  LRMRRTSKLINTLEELVLFAK 168
            L+ R++ K+IN LEE +L AK
Sbjct: 2506 LKTRKSHKIINKLEEALLRAK 2526


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 230  LRMRRTSKLINTLEELVLFAK 168
            L+ R++ K+IN LEE +L AK
Sbjct: 2506 LKTRKSHKIINKLEEALLRAK 2526


>AL021493-7|CAA16389.3|  345|Caenorhabditis elegans Hypothetical
           protein Y51A2B.4 protein.
          Length = 345

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 4   RGERLVSSFLFFFLTEFIYNNHFYGL 81
           RG R +S F F  ++ FI +  F+GL
Sbjct: 101 RGTRTMSQFFFESMSAFIPDTTFHGL 126


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 143 LKDSAENPDDVTKAPTAVKETKP*K*LL*INSVKKKNKKLETSL 12
           +KD   +  +  K  ++  E  P K L+  + VKK+ KK E  L
Sbjct: 53  VKDEKNSNSEEKKTTSSNNEVPPQKKLIGNDEVKKEKKKSEDDL 96


>Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical
           protein F38E11.12 protein.
          Length = 626

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 236 PSLRMRRTSKLINTLEELVLFAKLVG 159
           P+  ++   +++NTL  L+LFA ++G
Sbjct: 320 PNTSLQNAFEIVNTLAGLLLFAVIMG 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,331,687
Number of Sequences: 27780
Number of extensions: 86691
Number of successful extensions: 214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)