Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P09
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    31   0.096
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   3.6  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   8.4  

>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 31.1 bits (67), Expect = 0.096
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 456 EPPQLGNEARLDPPPKGNPECLHKPSLQITSKTSSV 349
           +P ++     + PP   +P  LHKPSL+  S T  +
Sbjct: 524 QPLEVNRSISIPPPKSISPSILHKPSLESASSTPKI 559


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 482 LYRAGSGVKSLPSWGTKHVLIRHQRATRNVCT 387
           +Y  GS   S   WGTK +L+   R     CT
Sbjct: 50  IYTFGSQSISKLYWGTKEILLPVYRTIEEACT 81


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 303 NMNILGAYNICSQETRLNSHNIQVKSCAYYRSHR 202
           N   +GA   C +ET   SH IQ+ S A   ++R
Sbjct: 51  NQVCVGAVR-CKKETHNKSHKIQILSLAVLPAYR 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,548
Number of Sequences: 5004
Number of extensions: 37071
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)