Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P09
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0032 + 20043252-20044361                                         29   2.7  
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997...    28   4.8  
04_04_1494 - 33982041-33982071,33982163-33982261,33982579-33982655     27   6.3  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    27   8.4  

>03_05_0032 + 20043252-20044361
          Length = 369

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 356 DVLEVICNEGLCKHSGLPFGGGSRRASFPNWGGS*RRYQR 475
           DVLE I   G+ K+ GLP  G +R  +F    G+ R+Y R
Sbjct: 256 DVLEEIEQMGVFKYGGLPHWGKNRNLAFV---GAARKYPR 292


>03_02_0631 +
           9969841-9969868,9969965-9970082,9970186-9970828,
           9971146-9971935,9972002-9972051,9972618-9972704
          Length = 571

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 456 EPPQLGNEARLDPPPKGNPECLHKPSLQITSKTS 355
           +PP L    ++ PPP   P+ +  P  Q  SK S
Sbjct: 68  KPPPLQKAPKVSPPPPQKPDKVSPPPAQKPSKVS 101



 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 453 PPQLGNEARLDPPPKGNPECLHKPSLQITSKTS 355
           PP     A++ PPP   P  L  P+L   +K S
Sbjct: 104 PPPPQKSAKVSPPPAAKPPKLSPPNLAKATKPS 136


>04_04_1494 - 33982041-33982071,33982163-33982261,33982579-33982655
          Length = 68

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 377 NEGLCKHSGLPFGGG 421
           NEG+  H  LPFGGG
Sbjct: 47  NEGVAHHVALPFGGG 61


>03_05_0697 +
           26888791-26888861,26890468-26890579,26891561-26891757,
           26892215-26892266,26893530-26893795,26894007-26894229,
           26895154-26895327,26895408-26895485,26895566-26895817,
           26896138-26898204,26899477-26901322,26901474-26901574,
           26902179-26902535,26902681-26902799,26903558-26903559,
           26903630-26903662,26903709-26903841,26904285-26904537,
           26905688-26905912,26906401-26906466,26907373-26907471,
           26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 303 NMNILGAYNICSQETRLNSHNIQVK 229
           N+N L  Y+ICSQ + L ++NI  K
Sbjct: 467 NLNGLVLYHICSQSSHLYANNIASK 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,961,413
Number of Sequences: 37544
Number of extensions: 220019
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)