Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P09
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67735-1|CAN86576.1|  404|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    27   7.6  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    27   7.6  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      27   7.6  
U41017-7|AAY86315.1|  251|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z67735-1|CAN86576.1|  404|Caenorhabditis elegans Hypothetical
           protein C15A7.4 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
 Frame = +1

Query: 19  IFV*LPS--QNNNIFKILKWTYYCE--VCVIICLKVINYVY 129
           +F  LP+   +N +F +LK+ +Y +  VCV +CL+ ++ +Y
Sbjct: 362 LFAQLPNVFADNRVF-VLKFVFYVDRVVCVALCLQFLSVIY 401


>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 476 RAGSGVKSLPSWGTKHVLIRHQRATRNVCTSLHYKSPLKHLV 351
           +A S +K  P+ GT   L+R+ +  +    SL YK+ +KH++
Sbjct: 808 KAESTLKGTPN-GT--FLVRYSKNRKQTAISLSYKNDVKHMI 846


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 476 RAGSGVKSLPSWGTKHVLIRHQRATRNVCTSLHYKSPLKHLV 351
           +A S +K  P+ GT   L+R+ +  +    SL YK+ +KH++
Sbjct: 840 KAESTLKGTPN-GT--FLVRYSKNRKQTAISLSYKNDVKHMI 878


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 476 RAGSGVKSLPSWGTKHVLIRHQRATRNVCTSLHYKSPLKHLV 351
           +A S +K  P+ GT   L+R+ +  +    SL YK+ +KH++
Sbjct: 840 KAESTLKGTPN-GT--FLVRYSKNRKQTAISLSYKNDVKHMI 878


>U41017-7|AAY86315.1|  251|Caenorhabditis elegans Hypothetical
           protein T26C11.8 protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 228 FLLGYYVNSVLFPDC-IYYTHLKYSCFFLLCEILAKSKINYV 350
           FLLG+Y   V F  C +Y+       +F+ C I  +   N V
Sbjct: 181 FLLGFYNCLVTFACCLVYFLPTVLGIWFMYCTIYEEQDANIV 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,832,826
Number of Sequences: 27780
Number of extensions: 211887
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)