Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P06
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   1.8  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    24   4.1  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    23   5.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    23   7.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    23   9.6  

>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 171 SISKSYRGALQVSVEVGRTILLLNK 245
           +ISKS +G  +++VE+GR I L  K
Sbjct: 194 TISKSDQGVKRITVELGRIISLDKK 218


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 153 GGLNAGSISKSYRGALQVSVEVGRTILLLNKLECSK 260
           GG N    +K   GA+  + EVG+ +  +N++E SK
Sbjct: 227 GGSNTLQQTKDVGGAIAPAAEVGKEV--INEVENSK 260


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 215 GGPDNFTFEQIRVLKAG 265
           GGP+N  FE++ V + G
Sbjct: 16  GGPENVKFEEVPVAEPG 32


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 67  RSCICAPRCRCTALAVITDTSAEHIVGEPAG 159
           R CIC   C        T +S + IV  PAG
Sbjct: 34  RQCICLRWCISKEYHEFTCSSLQFIVIRPAG 64


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 96  PAARRTNATTSFLTRNNFSYTLLELDYR 13
           P A+++N +  FLT +  S+T+  L  R
Sbjct: 47  PIAQKSNISLPFLTLSPCSFTICSLRAR 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 942,610
Number of Sequences: 5004
Number of extensions: 14227
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)