Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P06
         (266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-3|AAB52664.2|  467|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical...    25   9.7  

>U56965-3|AAB52664.2|  467|Caenorhabditis elegans Hypothetical
           protein C15H9.4 protein.
          Length = 467

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 134 SADVSVITANAVHRQRGAQ 78
           SAD   + +NAVH+ RGA+
Sbjct: 180 SADTDEVESNAVHKNRGAK 198


>AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical
           protein Y54G2A.27 protein.
          Length = 229

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 148 HRRYAPQTCQ*SPLMRCTGSAAH 80
           HRR    +   SPL RC   AAH
Sbjct: 206 HRRVGWSSSSSSPLSRCRARAAH 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,587,781
Number of Sequences: 27780
Number of extensions: 92836
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)