Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P05
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   159   1e-40
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   159   2e-40
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   1.4  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   4.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   7.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   7.3  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.3  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   9.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   9.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  159 bits (386), Expect = 1e-40
 Identities = 73/102 (71%), Positives = 85/102 (83%)
 Frame = +1

Query: 88  LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 267
           ++ ARP VS+YS K   V+  ++ LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 268 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRM 393
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRM
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRM 101


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  159 bits (385), Expect = 2e-40
 Identities = 73/102 (71%), Positives = 85/102 (83%)
 Frame = +1

Query: 88  LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 267
           ++ ARP VS+Y+ K   V+  +L LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 268 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRM 393
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRM
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRM 101


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 206 SLTRSGLMGALNTNGRGSEAPATTSLF 126
           S T SGL GA NTN +   +   T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
 Frame = +3

Query: 300 SCCSPYSPCT----WWWYPQIWAG 359
           +CC  Y   T    WWW    W G
Sbjct: 343 ACCGGYDGVTCGVQWWWNNDTWDG 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 386  PPRHMLPNAPCPDLWVPPP 330
            PP+   P  P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 386  PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 279
            PP    P  P P + VPP       +TA PVP  SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224



 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = -2

Query: 386  PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 279
            PP    P  P P   +PP      +A   P P   A
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 152 EAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKH 45
           ++ A  S F EY +    +++ L SL  +SYSS  +
Sbjct: 650 DSNADESQFLEYANDSPNSSESLESLNNQSYSSSPY 685


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 209 TSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLIS 78
           +SLT S  + + +TN   S +P ++SL S    +   A+    S
Sbjct: 83  SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTS 126


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 382 RGTCYRMHP-AQICGYHHHVHGEY 314
           +G+    HP + +CGY + VHG +
Sbjct: 58  KGSVVYFHPTSDLCGYKNIVHGGF 81


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 76  SEMSLSVARPLVSVYSE 126
           SEMSL++A P+ + Y+E
Sbjct: 96  SEMSLTIALPISAAYTE 112


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 121  NTPTLKVGLLTDSFRFISEVIPPKN 47
            N+P+    L   SF+F++ ++P +N
Sbjct: 1952 NSPSTNTELCQASFKFLASILPYEN 1976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,763
Number of Sequences: 5004
Number of extensions: 30446
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)