Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P05
(393 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 138 1e-33
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.22
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.22
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 0.51
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 0.51
U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related ... 30 0.68
U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related ... 30 0.68
AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protei... 30 0.68
AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protei... 30 0.68
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 29 1.2
AF130443-1|AAD28468.1| 956|Caenorhabditis elegans EAG K+ channe... 29 1.6
AF036695-1|AAB88348.2| 956|Caenorhabditis elegans Egg laying de... 29 1.6
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 28 2.7
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 27 3.6
AF068719-3|AAM45352.1| 603|Caenorhabditis elegans Hypothetical ... 27 3.6
AF068719-2|AAC17783.1| 633|Caenorhabditis elegans Hypothetical ... 27 3.6
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 27 6.3
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 6.3
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 26 8.4
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 138 bits (334), Expect = 1e-33
Identities = 66/99 (66%), Positives = 77/99 (77%)
Frame = +1
Query: 97 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 276
ARPLV+VY EK E + + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 277 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRM 393
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG M
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHM 100
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 0.22
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 182 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 69
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 0.22
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 182 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 69
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.51
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 194 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 99
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.51
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 194 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 99
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related
protein 2, isoform b protein.
Length = 482
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 76 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 219
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155
>U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related
protein 2, isoform a protein.
Length = 548
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 76 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 219
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221
>AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protein
protein.
Length = 482
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 76 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 219
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155
>AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protein
protein.
Length = 548
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 76 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 219
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +1
Query: 82 MSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVS 255
MS++V P +S VV+ + F++ P ++ D H+ + A CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>AF130443-1|AAD28468.1| 956|Caenorhabditis elegans EAG K+ channel
EGL-2 protein.
Length = 956
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 167 NGRGSEAPATTSL--FSEYTDTKGRATDRLISLYQRSYSSKKHYRRWQRPSAMPP 9
N G+ P+T + FS ++ R T + + S++H WQR S +PP
Sbjct: 856 NNGGANTPSTMPVGSFSALNESGNRLTLDAAPVARSVSWSEQHQPHWQRTSTVPP 910
>AF036695-1|AAB88348.2| 956|Caenorhabditis elegans Egg laying
defective protein 2 protein.
Length = 956
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 167 NGRGSEAPATTSL--FSEYTDTKGRATDRLISLYQRSYSSKKHYRRWQRPSAMPP 9
N G+ P+T + FS ++ R T + + S++H WQR S +PP
Sbjct: 856 NNGGANTPSTMPVGSFSALNESGNRLTLDAAPVARSVSWSEQHQPHWQRTSTVPP 910
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +1
Query: 229 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGR 390
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGR 193
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
protein F31E3.4 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 215 TWTSLTRSGLMGALNTNGRGSEAPATTSLFSEY 117
TW++ M LN+NG +E P TSL S +
Sbjct: 270 TWSNHPAGVKMFDLNSNGNSAEFPIETSLISAF 302
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 239 WRAFFDIDT-WTSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATD--RLISLYQ 69
++ FFD + W S+ +G++N G G+ + LFS TD +L S+Y
Sbjct: 2319 YQGFFDHNLEWVSIENIQFVGSMNPIGDGAAVSISNRLFSLLRCVSLNTTDSSQLTSIY- 2377
Query: 68 RSY 60
R+Y
Sbjct: 2378 RTY 2380
>AF068719-3|AAM45352.1| 603|Caenorhabditis elegans Hypothetical
protein H14N18.4b protein.
Length = 603
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 207 CPRINVEERAPALLXXXXXXXXXXXXVLGYRSCCSPYSPCTWW 335
C IN E APA V+GY+S +P +W
Sbjct: 135 CQTINARETAPAAATETMFVDNPKESVMGYKSIATPSELHGFW 177
>AF068719-2|AAC17783.1| 633|Caenorhabditis elegans Hypothetical
protein H14N18.4a protein.
Length = 633
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 207 CPRINVEERAPALLXXXXXXXXXXXXVLGYRSCCSPYSPCTWW 335
C IN E APA V+GY+S +P +W
Sbjct: 165 CQTINARETAPAAATETMFVDNPKESVMGYKSIATPSELHGFW 207
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 91 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 243
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 803 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 855
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 91 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 243
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 808 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 860
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 91 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 243
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 803 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 855
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 91 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 243
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 808 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 860
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 386 PPRHMLPNAPCPDLWVPPPRTRG 318
PP P AP P +++PPP G
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPG 182
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 386 PPRHMLPNAPCPDLWVPPPRTRG 318
PP P AP P +++PPP G
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPG 182
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 316 IPRVRGGGTHRSGQGAFGNMCRGG 387
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 361 HPAQICGYHHHVHGEYGLQHDRYPKTRRWFDDR 263
HPA +CG+ G Y + P W +DR
Sbjct: 264 HPAPVCGFEWRKTGRYMPRKCISPILMSWCEDR 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,527,113
Number of Sequences: 27780
Number of extensions: 189386
Number of successful extensions: 699
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -