Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P04
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192...    27   7.5  
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140...    27   10.0 

>01_07_0198 -
           41918276-41918408,41918486-41918841,41919091-41919237,
           41919666-41921789,41922150-41922344,41922488-41922568,
           41923325-41923414,41923507-41923593,41923914-41923961
          Length = 1086

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 238 HCAC-FC*RCAEWKSMTAAVVVKMNNKLKLCKTRKILTKKISTYLNMDTSSKRQENT 405
           +CA  FC  C+  KS+ A++    N   ++C +      K++  L  DT+S  +  T
Sbjct: 678 NCALVFCHSCSSKKSLKASLAPNPNKPYRVCDS---CYSKLTKGLETDTNSSTKRGT 731


>02_01_0211 -
           1406098-1406227,1406581-1406714,1407241-1407380,
           1407639-1407829,1408853-1409346
          Length = 362

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 306 HLHHNSSRHRLPLRTS 259
           HLHH+   HRLPL  S
Sbjct: 15  HLHHHHRHHRLPLLPS 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,630,718
Number of Sequences: 37544
Number of extensions: 148138
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)