Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P04
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related p...    28   2.9  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   8.9  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related
           protein 1 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -2

Query: 265 HIFSRNTHNVTQNKHLKIFPQDPQSQLHQQHIFYGENPNDNKSQVLQTNH*FYVPLF*LQ 86
           H FS  T      K ++IF  D  S  H ++  +  +  +   ++LQ NH FY+  F L+
Sbjct: 277 HSFSERT-----TKFVRIFYNDIWSLPHWRYSTFKRDQTEIFHKILQLNHLFYLVSFGLK 331

Query: 85  YLLMIFF 65
               +FF
Sbjct: 332 KPENLFF 338


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 VVKMNNKLKLCKTRKILT--KKISTYLNMDTSSKRQEN 402
           +V + ++LK  K   I++  +K  T LNMD  S  +EN
Sbjct: 200 IVSLQSQLKQLKPESIISDSQKSLTNLNMDIDSDEEEN 237


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 VVKMNNKLKLCKTRKILT--KKISTYLNMDTSSKRQEN 402
           +V + ++LK  K   I++  +K  T LNMD  S  +EN
Sbjct: 200 IVSLQSQLKQLKPESIISDSQKSLTNLNMDIDSDEEEN 237


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 VVKMNNKLKLCKTRKILT--KKISTYLNMDTSSKRQEN 402
           +V + ++LK  K   I++  +K  T LNMD  S  +EN
Sbjct: 153 IVSLQSQLKQLKPESIISDSQKSLTNLNMDIDSDEEEN 190


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 205  QDPQSQLHQQHIFYGENPNDNKSQ 134
            Q PQ Q  QQH FY + P    S+
Sbjct: 1830 QQPQQQPQQQHAFYQDPPTSLSSK 1853


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 205 QDPQSQLHQQHIFYGENPNDNKSQ 134
           Q PQ Q  QQH FY + P    S+
Sbjct: 455 QQPQQQPQQQHAFYQDPPTSLSSK 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,875,206
Number of Sequences: 27780
Number of extensions: 146368
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)