Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P03
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0294 - 21658515-21658573,21658642-21659047,21659166-216593...    33   0.21 
09_01_0149 + 2240183-2241133                                           27   8.0  

>02_04_0294 -
           21658515-21658573,21658642-21659047,21659166-21659307,
           21659411-21659626,21659735-21659830,21660180-21660295,
           21660501-21660604,21660970-21661067,21661167-21661272,
           21661386-21661473
          Length = 476

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -2

Query: 228 LIVLIIQKICGKGVLYTSKIIYLD*WVGRLSYDVHKYLLRLILDIYF--SCSIGPCALLI 55
           +I L + +      LY  ++ Y+D WV  +  D  K+L  L LD++F  + S+ P  L  
Sbjct: 179 IIALAVAEFHSAQSLYRQELQYVDRWVKEVRLDQLKFLRILPLDVFFFLASSVLPRELSD 238

Query: 54  TREIYIPN 31
            R  +I N
Sbjct: 239 ARIAWIQN 246


>09_01_0149 + 2240183-2241133
          Length = 316

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 213 LLIQLETVFKALFKYDKIISKINYYITILILKILMVINVIIIFLLYRFCKFYFA 374
           L I+L+T   +  +Y  I+ ++ + +T LIL ++ V  V ++      C  +FA
Sbjct: 62  LAIKLQTTDPSSAEYRMILEELKHDVTQLILVVVAVELVALVLGFVNQCVGFFA 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,699,814
Number of Sequences: 37544
Number of extensions: 196333
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)