Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P02
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.50 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.50 
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.66 
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    28   0.66 
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   1.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   1.5  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    26   2.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.1  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    25   6.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   6.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.1  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   8.1  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.1  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 144 IFWIPPILSHFFFRFTLLYIF 82
           + WI P++S  FF ++LL++F
Sbjct: 437 VHWIVPLISSIFFGWSLLFVF 457


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
 Frame = -1

Query: 211 LKTTEHIGIGLIPFNAVFFVDRYFLDS------TDPLSFFFSIYSFVHFP-LQFTLTYIF 53
           L    H+   LIPF   F +    + S      +  +SF F  +SF+ FP L F L   F
Sbjct: 141 LSIKSHVHFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFILFPCF 200

Query: 52  SR*LKQNTLTFIHSF 8
           S  L  N+ +    F
Sbjct: 201 SLFLSSNSFSLASPF 215


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 144 IFWIPPILSHFFFRFTLLYIF 82
           I WI PI++  FF F+LL +F
Sbjct: 442 IHWIVPIIASAFFGFSLLIVF 462


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 407 YIYISKVCFLVRGKLENYW---TDQRETTTIRRGINSRW 300
           +I +    F +  K+EN W    ++RE   IRR IN+R+
Sbjct: 231 FIGVPLCLFALPDKMENAWFLTREEREVAIIRRDINARY 269


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 452 DGYTSNVQYKIHFTIYIYISKVCFLVRGKLENYW 351
           DGY     Y     I+ Y+SKV +  R KL+ YW
Sbjct: 114 DGYALQPSY-----IHEYLSKVLYARRNKLDPYW 142


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 132 PPILSHFFFRFTLLYIFHF-NLRLHTFF 52
           PPIL HF F   +L IF + N  +  FF
Sbjct: 315 PPILRHFSFGIVVLAIFSYCNFGIKQFF 342


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 111 KNERGSVESKKYLSTKNTALKGISPIPICSVV 206
           +NE  S   K +   KN  L  +SP  ICS++
Sbjct: 140 RNEVDSFLQKNFFMVKNEFLYRLSPSYICSII 171


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 378  CPR*TR-KLLDRSA*NHNHSTRN***MVIGYIFFKFFEPFAMFSQF 244
            CP  T  + L+R +  + H  RN   + +GY+FF  F    +F  F
Sbjct: 1468 CPYQTADQFLERFSMRYTHRWRNLG-IFVGYVFFNIFAVLLLFYVF 1512


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 SNGCGF--TLIGPVVFEFTSDKKTNFAYIYVDSKMYFVLHIRCV 446
           S  C F  +LI PV  E  S ++   + +   SK    LH  CV
Sbjct: 224 SKPCDFCKSLISPVYLELPSVRRNANSTVKPTSKDILALHAECV 267


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 174 LSTQYFS*TGIFWIPPILSHFFFRFTLLYIFHFN 73
           L T YF     +W   + + F + F  LY F F+
Sbjct: 166 LVTSYFQHVNWWWPTFVYNDFMYEFERLYAFGFH 199


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 431  QYKIHFTIYIYISKVCFLVRGKLENYWTDQRET 333
            Q+ IH    IYI++V +L    LE    D  ET
Sbjct: 1067 QFAIHIVTLIYITRVVYLYEDPLEK--VDLEET 1097


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 369 TSDKKTNFAYIYVDSKMYFVLHIRCVTVDRLFEF 470
           TS+K+T   ++Y+  K+Y   H  C+  DR   +
Sbjct: 134 TSEKQTK--HVYIRRKIYDSQHQLCIEEDRTLAY 165


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 136 DSTDPLSFFFSIYSFVHFPLQFTLTYIFSR*LKQNTLTFI 17
           DSTD   + FSI  F  + +  T+ YI      Q  LT+I
Sbjct: 181 DSTDKEFWDFSIDDFAQYDIPDTIDYILKT-SGQTKLTYI 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,491
Number of Sequences: 5004
Number of extensions: 48045
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)