Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P02
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    29   1.4  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U39678-8|AAK39208.2|  228|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 129 PILSHFFFRFTLLYIFHFNLRLHTFF 52
           P+L H F R     +FHFN+RL + F
Sbjct: 33  PVLFHMFHRCKNTQLFHFNIRLISAF 58


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 290 IYFSNSLSPLPCFLNLFVCYPFDAPSPQNY*TY 192
           I  ++ L+ L CF+NLF+CY     SP+   TY
Sbjct: 9   IGINSILTLLGCFINLFLCYLAIFQSPKAIRTY 41


>U39678-8|AAK39208.2|  228|Caenorhabditis elegans Hypothetical
           protein C39D10.6 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 146 VFFGFHRSSLIFFFDLLFCTFSTSIYAYIHFFPLIKTKYSYFYSFI 9
           + F F RSS +F +  +   FS  I+  +  F + K K  Y Y ++
Sbjct: 62  IIFSFTRSSTVFVYTCMSTAFSIVIFGSL-LFGVWKEKRLYLYPYL 106


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 138 WIPPILSHFFFRFTLLYIFHFNLRLHTFF 52
           WI   +S + F   LL++F F + L TF+
Sbjct: 193 WIAGYISIYQFLHVLLFVFTFTVSLFTFY 221


>Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical
           protein R13G10.2 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 241 LFVIPLTHHHLKTTEHIGIGLIPFNAVFFVDRYFLDSTD 125
           +FV PL     K  + +G GLI   AV F DR F D+ D
Sbjct: 624 MFVPPLPIEKQKAIDDLGAGLIEKIAVKF-DRRFWDTVD 661


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 117 HFFFRFTLLYIFHFNLRLHTFF 52
           +FF  ++ L  FHFN+++  FF
Sbjct: 45  YFFLNYSNLLAFHFNIKILFFF 66


>Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical
           protein C44B9.1 protein.
          Length = 954

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 157 FVDRYFLDSTDPLSFFFSIYSFVHFPLQFTLT 62
           + DRY  +  + LS FF   SF   P+ F  T
Sbjct: 449 YFDRYHTERMEELSMFFENESFALCPVPFQFT 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,620
Number of Sequences: 27780
Number of extensions: 264801
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)