Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P02
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          25   0.33 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              24   0.76 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.3  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 395 SKVCFLVRGKLENYW 351
           SKVC +VR KLE  W
Sbjct: 54  SKVCIVVRRKLEENW 68


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 256 VFSICLFVIPLTHHHLKT 203
           +F+IC+ V  +TH  LKT
Sbjct: 7   IFAICVCVGAMTHEELKT 24


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 329 LWFHADRSSSFRVYLGQENKLCLYIC 406
           LW+  DR+S++++    +  L L+ C
Sbjct: 281 LWYWIDRNSAYKIDQRIQKGLFLFAC 306


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 247  ICLFVIPLTHHHLKTTEHIGIG 182
            + L ++P T +HL+ T H   G
Sbjct: 1520 VVLDLVPATWYHLRVTAHNNAG 1541


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -3

Query: 392 KVCFLVRGKLENYWTDQRETTTIRRGINSRWL*AIYFSNSLSPLPCFLN 246
           K+ F +      +WTD R     R G+ +  + + +  N   P   F+N
Sbjct: 54  KMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 102


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -3

Query: 407 YIYISKVCFLVRGKLENYWTDQRETTTIRRGINSRWL 297
           Y ++S    L  G   NYW  +       R   S WL
Sbjct: 87  YFFMSMRSELPWGSCNNYWNTKNCVNPYDRDSLSCWL 123


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 101 LLFCTFSTSIYAYIHFFPLIKTKYSYFY 18
           LL  ++      +++F PL    YSY++
Sbjct: 211 LLSASYLVCYGIWVYFVPLFLIIYSYWF 238


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 457 RSTVTHRMCNTKYILLST 404
           + TV  +  N+KYIL ST
Sbjct: 322 KKTVPLKKVNSKYILKST 339


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 101 LLFCTFSTSIYAYIHFFPLIKTKYSYFY 18
           LL  ++      +++F PL    YSY++
Sbjct: 87  LLSASYLVCYGIWVYFVPLFLIIYSYWF 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,326
Number of Sequences: 438
Number of extensions: 3301
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)