Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O23
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   1.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   4.1  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   5.5  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   5.5  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    24   9.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    24   9.5  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    24   9.5  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 117 FSGYFRTLHVRVSPTLARNRPSLPPLPIALADIGLT 10
           FSG  +   V  SP+ +++ PSLP  P+   DI +T
Sbjct: 406 FSGTPQINVVPSSPSKSQSGPSLPANPLLQTDISIT 441


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 RVASCGIPDYRTVVKSPICLIVVIR 253
           +V+    PDY TV+K P+ L  ++R
Sbjct: 327 KVSKRDAPDYYTVIKEPMDLGTILR 351


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 79  THPDVKRPEIPTKPPGAVRL 138
           T P +K+PEIP +  G +++
Sbjct: 595 TPPHIKKPEIPLRVSGPIKV 614


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 197 IPDYRTVVKSPICL 238
           IPDY T++K+PI L
Sbjct: 265 IPDYPTIIKNPIDL 278



 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 188 SCGIPDYRTVVKSPICL 238
           +CG PDY  V+K P+ L
Sbjct: 424 ACGCPDYFKVIKHPMDL 440


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 197 IPDYRTVVKSPICL 238
           IPDY T+VK+P+ L
Sbjct: 120 IPDYPTIVKNPMDL 133


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 81   SPTLARNRPSLPPLPIALADI 19
            S  LA++   LPPLP  +AD+
Sbjct: 1467 STDLAQSTVVLPPLPTEIADV 1487


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 180 RCLRKLSRIAPIPNEADGPGGFSGYFRTLHVRVSPTLARNRPSLPPLPIALAD 22
           RC+  L  ++ +P EA  P   S  +  L +RV   L  N P++  L +   D
Sbjct: 135 RCV--LQFLSVLPEEASDPRKTSLSWEELCIRVDELLRDNGPAVLELLVQYVD 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,934
Number of Sequences: 5004
Number of extensions: 33271
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)