Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O23
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 30 0.57
08_02_0883 + 22229278-22230009 29 1.3
06_01_0857 + 6502039-6502530 29 1.3
01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299... 28 2.3
05_04_0341 + 20420657-20420925,20421192-20421246 28 3.0
10_06_0170 + 11431540-11432259,11434552-11434644,11434739-114348... 27 4.0
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 27 4.0
02_05_1252 + 35261135-35261935 27 4.0
04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727 27 7.0
06_03_0536 + 21906583-21908037 26 9.2
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 30.3 bits (65), Expect = 0.57
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 171 RKLSRIAPIPNEADGPGGFSGYFRTLHVRVSPTLARNRPSLPPLPIALADI 19
+K +R+ + + A GPGG YF L + V P L R R S ALA +
Sbjct: 25 KKRARLRALLDRAYGPGGRDDYFSALRL-VLPGLDRERGSYGLKEAALASV 74
>08_02_0883 + 22229278-22230009
Length = 243
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 200 VCRRRRRGACE-SYPVSPPSQMRRTAPGGLVGI 105
VC R RGA ++P SPP +RR PG + +
Sbjct: 71 VCLRGSRGAGSLNFPESPPPDVRRRFPGAALTV 103
>06_01_0857 + 6502039-6502530
Length = 163
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 23 SANAIGKGGNDGRFRASVGLTRT*SVRKYPL 115
+A G GG GR R S+G+ R S R +PL
Sbjct: 124 AAEEAGGGGGGGRRRGSLGVARRKSRRHFPL 154
>01_06_1597 +
38528241-38528588,38529623-38529721,38529814-38529927,
38530349-38530420,38530520-38530630,38530738-38530857,
38531541-38531613,38531997-38532077,38532167-38532231,
38532383-38532484,38532571-38532744,38532873-38532938
Length = 474
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 38 GKGGNDGRFRASVGLTRT*SVRKYPLNPPGPSASFGMGAIR 160
GKG GR R+ + SVR PL P P A M IR
Sbjct: 83 GKGKGRGRGRSGAAVPMGASVRAVPLQSPLPPAEEVMAFIR 123
>05_04_0341 + 20420657-20420925,20421192-20421246
Length = 107
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -3
Query: 197 CRRRRRGACESYPVSPPSQMRRTAPGGLVGISGR 96
CRRR RG E PPS + A GL G +GR
Sbjct: 14 CRRRGRGRREIRGPPPPSSAQAAARAGLSG-NGR 46
>10_06_0170 +
11431540-11432259,11434552-11434644,11434739-11434806,
11434873-11435011,11435179-11435229,11435600-11435675,
11436216-11436274
Length = 401
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -2
Query: 150 PIPNEADGPGGFSGYFRTLHVRVSPTLARNR 58
P P A G GG G R R+SPTLAR+R
Sbjct: 6 PPPLSAAGAGGGGGR-RRWQKRLSPTLARDR 35
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 71 SVGLTRT*SVRKYPLNPPGPSASFGMGAIRDS 166
S+ TRT + RK P PP P G +R S
Sbjct: 29 SIASTRTKTTRKSPPAPPPPRPRRAFGTVRSS 60
>02_05_1252 + 35261135-35261935
Length = 266
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 203 QVCRRRRRGACE---SYPVSPPSQMRRTAPGGLVGISGRF 93
Q RRR+RG C + V+ + + +APG +V + GRF
Sbjct: 104 QFSRRRQRGVCVLSGAGTVANVALRQPSAPGAVVALHGRF 143
>04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727
Length = 460
Score = 26.6 bits (56), Expect = 7.0
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 56 GRFRASVGLTRT*SVRKYPLNP-PGPSASFGMGAIRDSFRKHRVASCGIPDY 208
GR A GL T +Y L+ P P F + AI D F +PDY
Sbjct: 50 GRRLAYHGLRPTLVTTRYVLSTTPPPGDPFRVAAISDGFDDDAGGMAALPDY 101
>06_03_0536 + 21906583-21908037
Length = 484
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = -2
Query: 186 ATRCLRKLSRIAPIPNEADGPGGFSGYFRTLHVRVSPTLARNRPSLPPLPI 34
A R R L P D PG F F + AR RP+LP LP+
Sbjct: 113 ARRGARHLLDGLPQGGGIDAPGEFLDGFHEPPQWLKEAAARTRPALPWLPL 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,202
Number of Sequences: 37544
Number of extensions: 258101
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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