Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O23
(391 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 28 2.7
U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical pr... 27 6.2
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 27 6.2
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and cap... 27 6.2
Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical p... 26 8.2
Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical p... 26 8.2
Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical pr... 26 8.2
U41559-5|AAC24258.1| 217|Caenorhabditis elegans Hypothetical pr... 26 8.2
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 55 RTISCQCGTHPDVKRPEIPTKPPGA 129
R SC CGT P P P PPGA
Sbjct: 77 RQASCNCGTQPS-NCPAGPPGPPGA 100
>U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical
protein R08E3.3a protein.
Length = 455
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 150 PIPNEADGPGGFSGYFRTLHVRVSPTLARNRPSLPPLPI 34
PIPN +D S Y + H +P+LPP PI
Sbjct: 169 PIPN-SDPRKWISQYINSSHTEKDFNFKLTKPALPPKPI 206
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 150 PIPNEADGPGGFSGYFRTLHVRVSPTLARNRPSLPPLPI 34
PIPN +D S Y + H +P+LPP PI
Sbjct: 169 PIPN-SDPRKWISQYINSSHTEKDFNFKLTKPALPPKPI 206
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 77 GLTRT*SVRKYPLNPPGPSASF 142
G TRT S+ PL PP P SF
Sbjct: 595 GATRTRSISSPPLPPPAPPNSF 616
>AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 4 protein.
Length = 756
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 132 PPHLGWGRYGIAFASTASPP 191
P H+ WG Y ++FA+ S P
Sbjct: 217 PGHIYWGEYPLSFAACLSQP 236
>Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 156 IAPIPNEADGPGGFSGY--FRTLHVRVSPTLARNRPSLPPLPIALAD 22
I P + GPGG Y + V+P L N P+ PP + D
Sbjct: 332 IYPGQQQPKGPGGAQAYPALSQRNSLVNPNLQPNHPTAPPQSLRKPD 378
>Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 156 IAPIPNEADGPGGFSGY--FRTLHVRVSPTLARNRPSLPPLPIALAD 22
I P + GPGG Y + V+P L N P+ PP + D
Sbjct: 345 IYPGQQQPKGPGGAQAYPALSQRNSLVNPNLQPNHPTAPPQSLRKPD 391
>Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 156 IAPIPNEADGPGGFSGY--FRTLHVRVSPTLARNRPSLPPLPIALAD 22
I P + GPGG Y + V+P L N P+ PP + D
Sbjct: 332 IYPGQQQPKGPGGAQAYPALSQRNSLVNPNLQPNHPTAPPQSLRKPD 378
>Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 156 IAPIPNEADGPGGFSGY--FRTLHVRVSPTLARNRPSLPPLPIALAD 22
I P + GPGG Y + V+P L N P+ PP + D
Sbjct: 345 IYPGQQQPKGPGGAQAYPALSQRNSLVNPNLQPNHPTAPPQSLRKPD 391
>U41559-5|AAC24258.1| 217|Caenorhabditis elegans Hypothetical
protein C26B2.2 protein.
Length = 217
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 2 GTRVRPMSANAIGKGGNDGRFRASVGLTRT*SVRKYPLNPPGPSAS------FGMGAIRD 163
G+++ A + KG N + R+ V L++ + NPP PS+ +G I
Sbjct: 106 GSKITMNPAKQVLKGRNTRKKRSMVDLSQINKIFGRDYNPPAPSSKSPPTIYVNLGVIYS 165
Query: 164 SFRKHRVASCGIPDYRTV 217
S H + I + +V
Sbjct: 166 SSSSHASDASSISSHTSV 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,606,658
Number of Sequences: 27780
Number of extensions: 205483
Number of successful extensions: 454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -