Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O22
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   5.7  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    24   7.6  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    24   7.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    24   7.6  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    24   10.0 
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    24   10.0 

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 143  LQKNITHRSYI-IFKTK*SYDIE-ALLAGLRHNCICKLARAII 21
            L   I+ R+Y  +F T+ S  +  ALL G RH C  + A  I+
Sbjct: 900  LDLTISRRAYKEVFMTRISSIVHLALLVGSRHKCFLRSAIEIL 942


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 256 KKKSTNFTRSCNNFCNKNKTL 318
           K K++N TRS N    KN+ L
Sbjct: 453 KIKNSNITRSLNRLVRKNRVL 473


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 388 KLKIHHYRQIISCE*LNHAHISNRAFCFYCKSYY 287
           K  I ++ Q I  +  NH   SNR+ C+  +  Y
Sbjct: 19  KTAIDYFTQAIGLDERNHILYSNRSACYASEKDY 52


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 259 KKSTNFTRSCNNFC 300
           +KST   +SC NFC
Sbjct: 943 EKSTTLQKSCTNFC 956


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 250 DYKKKSTNFTRSCNNFCNKNKT 315
           D  KKS +F   C+NF  KN +
Sbjct: 342 DVLKKSEHFMDFCSNFKGKNNS 363


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 100 LNSHMILKHYWQASDITVYASLHEQLFYIKI 8
           L+SH+     W +  I VY S ++ L  +K+
Sbjct: 205 LDSHLFFDTDWHSFSIDVYPSENQSLASVKM 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,169
Number of Sequences: 5004
Number of extensions: 22329
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)