Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O22
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632...    27   5.5  

>10_08_0672 +
           19762340-19762432,19762543-19762735,19763225-19763269,
           19763381-19763432,19763601-19763704,19763887-19763987,
           19764225-19764283,19764536-19764592,19764944-19764989,
           19765187-19765266,19766841-19767096,19767210-19767405,
           19768368-19768448,19768536-19768587,19768759-19768862,
           19769586-19769686,19769924-19769982,19770491-19770536,
           19770789-19770868,19770953-19771013
          Length = 621

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 300 AKVITRSCEVCGFFFVIN 247
           A+ I ++C  CGFF+V+N
Sbjct: 357 AESIRKACVECGFFYVVN 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,203,919
Number of Sequences: 37544
Number of extensions: 112699
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)