Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O22
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        28   2.8  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    28   2.8  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    27   6.5  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    27   6.5  
AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine re...    26   8.7  

>U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical
           protein F47E1.2 protein.
          Length = 744

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 226 SLSKSLTIDYKKKSTNFTRSCNNFCN-KNKTLYWKC 330
           S+  S+  + ++ + NFTR CN+ C+ +N  LY  C
Sbjct: 512 SIVNSIGSNNRQTNYNFTRECNSQCSCENARLYPVC 547


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 265 STNFT-RSCNNFCNKNKTLYWKC-VHG 339
           S+N+  + CN +C  N  L+W+C  HG
Sbjct: 133 SSNYHGKRCNRYCIANAKLHWECSTHG 159


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 265 STNFT-RSCNNFCNKNKTLYWKC-VHG 339
           S+N+  + CN +C  N  L+W+C  HG
Sbjct: 133 SSNYHGKRCNRYCIANAKLHWECSTHG 159


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 247 IDYKKKSTNFTRSCNNFCNKNKTLY-WKCV 333
           + ++KK++NF +    F  KNK +Y ++C+
Sbjct: 157 VPFEKKTSNFLQFQFKFLKKNKKMYDYRCI 186


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 247 IDYKKKSTNFTRSCNNFCNKNKTLY-WKCV 333
           + ++KK++NF +    F  KNK +Y ++C+
Sbjct: 157 VPFEKKTSNFLQFQFKFLKKNKKMYDYRCI 186


>AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 67 protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 136 KILLIDPT*FLKLNSHMILKHYWQA-SDITVYASL 35
           +I +ID T  +  N   IL H W A SD   YAS+
Sbjct: 214 QIAMIDSTTLILFNLIPILTHVWFASSDYQTYASI 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,817,786
Number of Sequences: 27780
Number of extensions: 125133
Number of successful extensions: 293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)