Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O21
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868...    28   4.4  
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746...    28   4.4  
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611...    27   5.8  
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357...    27   5.8  
04_03_0803 - 19835284-19836050,19836337-19836418                       27   5.8  
01_06_1069 + 34275823-34276167                                         27   5.8  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    27   7.6  

>07_03_0288 +
           16285485-16285721,16285811-16286184,16286499-16286892,
           16286917-16287806,16291189-16291446,16291518-16291628,
           16291697-16291775,16291880-16291972,16292095-16292280
          Length = 873

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 SNSAEPRSGSYAESSRPKDHSISRRK 337
           S+S+EP SGSY  SS P      +RK
Sbjct: 37  SSSSEPGSGSYHSSSDPHPSPAKKRK 62


>04_01_0576 +
           7466032-7466802,7468382-7468444,7469043-7469122,
           7469505-7469622,7470035-7470067,7470400-7470474,
           7470887-7471043,7471142-7471230,7472041-7472294,
           7472977-7473148,7473250-7473333,7473626-7473730,
           7474055-7474363,7474622-7474756,7476236-7476317,
           7476423-7476502,7476622-7476783,7477071-7477138,
           7478422-7478502,7478634-7478760,7478816-7478879,
           7480808-7480854,7481042-7481335
          Length = 1149

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 260 SNSAEPRSGSYAESSRPKDHSISRRKSFT 346
           SNS +  SGS ++ S+  DH ++ R S T
Sbjct: 491 SNSVQKHSGSVSDFSQENDHGVTSRVSNT 519


>12_02_0408 +
           18659494-18660362,18660472-18660634,18660976-18661139,
           18661253-18661511,18661605-18661712
          Length = 520

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 66  RGHGKMRGRNGGCGAPTCAAS 4
           RG  K   R GGC AP  AA+
Sbjct: 160 RGRSKAARRKGGCAAPAAAAA 180


>05_05_0381 +
           24531622-24532918,24535334-24535468,24535592-24535764,
           24536029-24536239,24536287-24536554,24536664-24536814,
           24536938-24537246
          Length = 847

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 288 ATQNLLVQKTTVSQDENLSPVYVASDVIRD*DVVAYNGPNK 410
           A  N+ +       D + S V VA D   D +V  +NGPNK
Sbjct: 170 AGNNMTLTAWKSPSDPSPSSVVVAMDTSGDPEVFLWNGPNK 210


>04_03_0803 - 19835284-19836050,19836337-19836418
          Length = 282

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 26  PQPPFLPRIFPWPRCQATPV 85
           P PP +P  +PWP C   P+
Sbjct: 128 PPPPPVPLPYPWPPCYYPPM 147


>01_06_1069 + 34275823-34276167
          Length = 114

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 63  GHGKMRGRNGGCGAPTCA 10
           G G  RGR GGCG P  A
Sbjct: 47  GDGVGRGREGGCGGPYAA 64


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 260 SNSAEPRSGSYAESSRPKDHSISRRKSFTSVCCQ*CHTRLRRGRLQW 400
           +N + P +G Y      K  +++ RK  + +    CH+   +GRL+W
Sbjct: 123 NNDSTP-AGRYQVKYNTKSAALAMRKQISVIDGDICHSLEYQGRLRW 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,880,789
Number of Sequences: 37544
Number of extensions: 220765
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)