Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O20
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.2
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 5.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 5.5
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 5.5
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 7.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 7.3
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 7.3
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.3
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 7.3
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.6
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +3
Query: 162 QMDGVPTSQCPRSASGFTLSQSLVERLGRDHEQPMLPPL----HHPIRDNSGCARSTYSP 329
+MDG P+SQ +S S T S+ + +L R +P + DN+ +S+
Sbjct: 167 EMDGDPSSQVNQSRSRKTHSELAITKLLRQQVSSFMPYIDSSGSESESDNTRIKKSSAKT 226
Query: 330 LQALSE 347
++AL++
Sbjct: 227 IKALTD 232
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 246 RDHEQPMLPPLHHPIRDNSGCARSTYSPLQALSESTCRDHGAQSAPPPQPIPR--VQQSS 419
R + +PP P +SG TY + S+ + +AP P P PR Q SS
Sbjct: 144 RPNVMSQMPP--PPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNSS 201
Query: 420 SQNVTLHPAVARCTAS 467
+ ++ A A TAS
Sbjct: 202 YASGSVPAATAASTAS 217
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +3
Query: 261 PMLPPLHHPIRDNSGCARSTYSPLQALSESTCRDHGAQSAPPPQPIPRVQQSSSQNVT 434
P +PP H P S + Y+P +++S +T + P P + SS T
Sbjct: 149 PPIPPPHLPNASGSSVYQPPYTPFRSVS-TTSSSNDTSITPFGDQTPILSSSSDPYAT 205
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 188 LTRWYTVHLTRLVPVAPPLLSLHHISS 108
L +W+ LT++ P P + +HH SS
Sbjct: 452 LQQWHNEILTKIAPSHRPTVYIHHGSS 478
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 144 DWHQPRQMDGVPTSQCPRSASGFTLSQSLVERLGRDHEQPMLPPLH 281
D ++ R + G+P+ S TLS+S+ L R P+ P+H
Sbjct: 125 DMYRRRSLHGLPSLSRRNSKKSSTLSRSISLHL-RSESAPISLPIH 169
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 201 ASGFTLSQSLVERLGRDHEQPMLPPLHH 284
++GF+LS++L + G DH L L H
Sbjct: 306 SNGFSLSKTLDDLRGIDHNDTRLKRLEH 333
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 297 NSGCARSTYSPLQALSESTCRDHGAQSAPPPQPIPRVQQSSSQ 425
N+ +S Y P Q S S+ + +SA PP P +Q S SQ
Sbjct: 223 NTPMQQSMYVPQQQTSHSSGASYQNESANPPVQSP-MQYSYSQ 264
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 170 VHLTRLVPVAPPLLSLHHISSPP 102
VHL+ +P+ L LH S+PP
Sbjct: 22 VHLSNFLPIINDLQLLHPASAPP 44
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 7.3
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +3
Query: 189 CPRSASGFTLSQSLVERLGRDH--EQPMLPPLHHPIRDNSGCARSTYSPLQALSESTCRD 362
CPR T +LV L R H E+P + + C RS ++ AL++
Sbjct: 80 CPRKGMVQTSRFALVAHL-RSHTGEKPFICSVPE-------CDRS-FTRSDALAKHMRTV 130
Query: 363 HGAQSAPPPQPIPRVQQSSSQNV 431
H A + P PIP+ QNV
Sbjct: 131 HEADTLRPSDPIPKAHPMHPQNV 153
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 381 PPPQPIPRVQQSSSQNVTLHPAV 449
PPP+P+PR++ S + L P V
Sbjct: 268 PPPKPLPRIRFIRSCSSPLAPPV 290
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 139 GATGTSRVKWTVYQRVSVQEARAGSPCRSLWWRGSAETTSS 261
GAT + R + QR +V + P S +TTS+
Sbjct: 11 GATSSERTAYAAPQRAAVDTSNVSPPSTQTGGYASKDTTST 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,338
Number of Sequences: 5004
Number of extensions: 42881
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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