Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O19
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   222   1e-58
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   220   6e-58
11_04_0329 - 16442298-16443734                                         29   1.6  
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78...    29   2.1  
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691     27   6.5  
03_05_0592 + 25952603-25952983,25953197-25953547                       27   8.7  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  222 bits (542), Expect = 1e-58
 Identities = 104/159 (65%), Positives = 126/159 (79%), Gaps = 2/159 (1%)
 Frame = +3

Query: 21  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 200
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 201 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 374
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 375 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 491
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYV 159


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  220 bits (537), Expect = 6e-58
 Identities = 103/159 (64%), Positives = 125/159 (78%), Gaps = 2/159 (1%)
 Frame = +3

Query: 21  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 200
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 201 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 374
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 375 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 491
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYV 159


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 445 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 275
           R+L A       G    +   + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 56  RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


>03_01_0099 +
           778521-778736,779521-779775,779831-779924,780064-780116,
           780301-780339,781091-781159,781275-781445,781533-781598,
           782533-782601,782993-783060,783308-783430,784095-784228,
           784412-784506,784600-784644,784755-784814,785548-785599,
           785674-785714,785857-785921,786704-786755,787021-787092
          Length = 612

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 423 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 292
           D+D   ++    + F  +  GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374


>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
          Length = 404

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 390 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLL 506
           + D E P+ +  +    + K+  L  ED    +VVKRLL
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLL 203


>03_05_0592 + 25952603-25952983,25953197-25953547
          Length = 243

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 357 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 500
           +V +   E+PGL   E    +   R+ +  +    +KE  +RRY+V+R
Sbjct: 157 VVARVFDELPGLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRR 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,548
Number of Sequences: 37544
Number of extensions: 290342
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)