Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O18
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 29 0.72
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.3
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 27 1.7
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.2
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 3.8
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 26 3.8
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 6.7
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 8.8
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 287 PLARKTALNRTLFKFVCILFCLCGAVVLRYKCRSEVSGSIPESGQVILGF 436
P K +LN ++ +LF LC A+++R I E +I GF
Sbjct: 171 PWTYKFSLNYLIYTAFALLFVLCAAIMVRDVAPLAAGSGISEIKCIISGF 220
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 584 HASYPGRVRQG*NRLHHPISQFRSVPDMIGGEPVAISGTNSRIQDDTEY-KNPISLDPTR 408
H+SY G G N H S S P +G + VA+ +S ++ + Y N D +
Sbjct: 86 HSSYAGSRISGGNSNSHLPSGVASAPAGLGIDKVAVGEVDSHLKSVSSYVSNSSGADRSF 145
Query: 407 GSN 399
SN
Sbjct: 146 SSN 148
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 507 RYDRGRACRHIGHKFQNPG*YRVQKPNIT*PDSGIEPETSERHLYRNTTAP 355
+YD R C GH ++ P +++ ++ SG PE+ + +T AP
Sbjct: 96 KYDFSRHCTDYGHSYEWPYFRSLRRESMLYHTSGSYPESQPPYSSYSTDAP 146
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 494 GEPVAISGTNSRIQDDTEYKNPISLDPTRGSNPRPQNDICTV 369
G P+ IS + + + + + + PT SN +P D+C++
Sbjct: 251 GRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSM 292
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -2
Query: 533 PISQFRSVPDMI-GGEPVAISGTNSRIQDDTEYKNPISLDPTRGSNPRPQ-NDICTVIQL 360
P S+ + P + GG A G +Q+ P+S+ P S P P N + T Q
Sbjct: 964 PTSKSKPFPRLATGGSTAAARGPRPVVQNKPAATKPVSM-PAAKSKPAPMANPVSTAQQT 1022
Query: 359 RHRGKIKCIQ 330
++R +Q
Sbjct: 1023 QNRPPAPAMQ 1032
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.8
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +2
Query: 32 GKCLAFSYLFKKKYFIKSLIYTYIKVLCKIKMMI-GIGDIVKLAVCPRLRPCFIYSLRFF 208
G+CL ++ K L + YIK++ ++ + + G I L P ++ I L+ F
Sbjct: 1525 GQCLLITFAQNKLTVHSVLTFDYIKLMVQMLLQLCKQGGIQYLK--PPVQRLMIQLLQIF 1582
Query: 209 FLYGTLIVFLKKYSTKVKLKYFS*IIPLARK 301
L + V LK+ S K KL S I L+RK
Sbjct: 1583 ILV-LMRVTLKEISNKDKLLLQS-IFLLSRK 1611
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 236 LKKYSTKVKLKYFS*IIPLARKTALNRTLFKFVCILFCLCGAVVL 370
L KY KV Y ++ L T L R L ILFC+ A++L
Sbjct: 254 LNKYYLKVTSYYVQRVLGLNVGTPLQRKLTVLAYILFCI--AIIL 296
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 167 PRLRPCFIYSLRFFFLYGTLIV 232
P+ FIY L FF+++G+L +
Sbjct: 273 PKATSRFIYRLIFFYIFGSLTI 294
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 404 SNPRPQNDICTVIQLRHRGKIKCIQI 327
S RP CT + + H+G+++C+ +
Sbjct: 362 SELRPFPTRCTNVFIGHKGRVRCLSV 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,171
Number of Sequences: 5004
Number of extensions: 60576
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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