Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O18
         (621 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein p...    33   1.1  
BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair cross-c...    33   1.1  
AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair cross-c...    33   1.1  
AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair cross-c...    33   1.1  
AB065724-1|BAC05945.1|  311|Homo sapiens seven transmembrane hel...    32   1.9  
BC007947-1|AAH07947.3|  178|Homo sapiens PHLDB3 protein protein.       31   4.3  

>L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein
           protein.
          Length = 1493

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 218 GTLIVFLKKYSTKVKLKYFS*IIPLARKTALNRTLFKFVCILFCLCGAVVL-RYKCRSEV 394
           GTL VF++++S  + +  +S   P+  KTA     +K  C+L       +L R K   ++
Sbjct: 698 GTLPVFMEQFSVPITMGGYSNASPVQVKTA-----YKCACVLRDTINPYLLRRMKSDVKM 752

Query: 395 SGSIPESGQVILGFCTL 445
           S S+P+  + +L FC L
Sbjct: 753 SLSLPDKNEQVL-FCRL 768


>BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 1493

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 218 GTLIVFLKKYSTKVKLKYFS*IIPLARKTALNRTLFKFVCILFCLCGAVVL-RYKCRSEV 394
           GTL VF++++S  + +  +S   P+  KTA     +K  C+L       +L R K   ++
Sbjct: 698 GTLPVFMEQFSVPITMGGYSNASPVQVKTA-----YKCACVLRDTINPYLLRRMKSDVKM 752

Query: 395 SGSIPESGQVILGFCTL 445
           S S+P+  + +L FC L
Sbjct: 753 SLSLPDKNEQVL-FCRL 768


>AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 1493

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 218 GTLIVFLKKYSTKVKLKYFS*IIPLARKTALNRTLFKFVCILFCLCGAVVL-RYKCRSEV 394
           GTL VF++++S  + +  +S   P+  KTA     +K  C+L       +L R K   ++
Sbjct: 698 GTLPVFMEQFSVPITMGGYSNASPVQVKTA-----YKCACVLRDTINPYLLRRMKSDVKM 752

Query: 395 SGSIPESGQVILGFCTL 445
           S S+P+  + +L FC L
Sbjct: 753 SLSLPDKNEQVL-FCRL 768


>AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair
           cross-complementing rodent repairnt regulator of
           chromatin, sub protein.
          Length = 1493

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 218 GTLIVFLKKYSTKVKLKYFS*IIPLARKTALNRTLFKFVCILFCLCGAVVL-RYKCRSEV 394
           GTL VF++++S  + +  +S   P+  KTA     +K  C+L       +L R K   ++
Sbjct: 698 GTLPVFMEQFSVPITMGGYSNASPVQVKTA-----YKCACVLRDTINPYLLRRMKSDVKM 752

Query: 395 SGSIPESGQVILGFCTL 445
           S S+P+  + +L FC L
Sbjct: 753 SLSLPDKNEQVL-FCRL 768


>AB065724-1|BAC05945.1|  311|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 311

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 23  SMFGKCLAFS----YLFKKKYFIKSLIYTYIKVLCKIKMMIG-IGDIVKLAVCPRLRPCF 187
           S  GK  AFS    +L     F  S+IY Y + L    +M G +  ++   V P L P F
Sbjct: 231 SAAGKWKAFSTCGSHLTVVVLFYGSVIYVYFRPLSMYSVMKGRVATVMYTVVTPMLNP-F 289

Query: 188 IYSLR 202
           IYSLR
Sbjct: 290 IYSLR 294


>BC007947-1|AAH07947.3|  178|Homo sapiens PHLDB3 protein protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 482 RQARPLSYLGRNETVKLGGVVYFNPA*PFRDNWREHMSC 598
           RQAR L+Y    E  KL GV+YF       + + +H+ C
Sbjct: 96  RQARRLAYYADKEETKLKGVIYFQ---AIEEVYYDHLRC 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,548,055
Number of Sequences: 237096
Number of extensions: 2149739
Number of successful extensions: 3548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3548
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)