Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O18
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical...    29   2.0  
Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical
           protein Y34D9A.2 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 270 ISHKLYHSPVKLH*IGLYSNLYAFYFASVAQLY 368
           I   L+HSP+    +GLY + +  YF  +  LY
Sbjct: 210 ILQTLFHSPIVFQSLGLYKSRFLVYFFLLGPLY 242


>Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical
           protein F56F3.4 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 496 PIISGTERNCEIGWCSLFQPCLTLPG*LA 582
           PI+SGT  + EIG    F P  T PG L+
Sbjct: 176 PILSGTPVDSEIGSAQTFSPVATPPGELS 204


>U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical
           protein R05G6.9 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 347 CLCGAVVLRYKCRSEVSGSIPESGQVILGFCT 442
           CLC      +KC SE+SG +       + FC+
Sbjct: 148 CLCNLGKTGFKCESEISGLLNMDPSAPITFCS 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,713
Number of Sequences: 27780
Number of extensions: 337539
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)