Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O17
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    29   1.4  
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693...    28   2.5  
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           28   3.3  
04_03_0852 + 20289439-20289721,20289858-20290642                       27   7.6  

>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 95  HQGRRMKMKGNWSYSLVLSLRHDASGENKLNVKFEPGELREAARTFEEARGTIKK 259
           H+ RRM    ++ +S+V S+ +  +G+N+L+      EL    +  EE    IK+
Sbjct: 214 HEERRMSDLSDFCWSVVSSVDNHVNGDNQLSSLAAEQELYNLQKECEEKDAIIKE 268


>01_06_0393 + 28968873-28968918,28969048-28969084,28969165-28969384,
            28969557-28969715,28969831-28969950,28972154-28972240,
            28972329-28972418,28972516-28972602,28972761-28972877,
            28972945-28973028,28973585-28975324,28975670-28975816,
            28975998-28976431,28976523-28976667
          Length = 1170

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +2

Query: 155  RHDASGENKLNVKFEPG------ELREAARTFEEARGTIKKY 262
            +HD  GE +L  +FEPG      +L++ ++ F+  R + KK+
Sbjct: 1086 KHDTHGEVQLIEQFEPGVYVTLIQLKDGSKVFKRVRFSKKKF 1127


>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 130 PVSLHLHSPPLVQPCKLPPCIIPNTIHAFS 41
           PV      PP+ Q C   PC  P++   FS
Sbjct: 50  PVCFEPFKPPIFQACSYEPCFCPDSGCGFS 79


>04_03_0852 + 20289439-20289721,20289858-20290642
          Length = 355

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 142 QRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTL 5
           Q ++P S  L  P ++ P  + P   P     ++QN   S PDCT+
Sbjct: 26  QPLSPDSPILRDPNVI-PIYMTPGSSPTVASCYNQNNTASGPDCTV 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,518,240
Number of Sequences: 37544
Number of extensions: 159463
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)