Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O16
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    56   1e-09
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    50   1e-07
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   2.6  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   2.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   3.4  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   3.4  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   4.5  
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    24   7.9  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
 Frame = +3

Query: 171 MPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVRCSRF 293
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKY 42



 Score = 33.1 bits (72), Expect = 0.013
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 295 LYTLVITDNENAEKLKQSLP 354
           LYTLV+ D + AEKL+QSLP
Sbjct: 43  LYTLVVADAKKAEKLRQSLP 62


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +3

Query: 171 MPREIKDIKDFLLKARRKDAKSVKIKKNPEN-VKFKVRCSRF 293
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRY 42



 Score = 33.1 bits (72), Expect = 0.013
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 295 LYTLVITDNENAEKLKQSLP 354
           LYTLV+ D + AEKL+QSLP
Sbjct: 43  LYTLVVADAKKAEKLRQSLP 62


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 215 RFQQKIFDILDFTRHDEVCNVAHTVKQN 132
           RF++KI D+L+  + +E   ++H   +N
Sbjct: 319 RFKEKILDLLEMKQQEENDRISHIEYEN 346


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 150 SDITHFIMPREIKDIKDFLLKARRKDAKS 236
           SD+  +   R++KD  D + K  RKD KS
Sbjct: 418 SDLKKYEKSRKLKDYIDDIRKGYRKDLKS 446


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 186 KDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFPVHPRHHGQRECRETETEFT 353
           K I+D+L K    ++ +V + K+PEN    +      ++     Q    ET   F+
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPENYLSSINNGHHALNDNPPSQVNFSETLVNFS 739


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +3

Query: 102 PIIGLYLKLFILFYSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVR 281
           PI+G+   L +L      + HF   + + + ++F  +   + ++   ++KN E  K   R
Sbjct: 101 PIVGVLGGLIVLVIIFYCLRHFKRKKFLAEQQEFERQFEEEKSRLAAVRKNTEQEKMGYR 160


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 171 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSR 290
           + RE  +     LKA RK+A+ V+ +  P   K+++  SR
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSR 472


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 292 NREQRTLNXXXXXXXXXFTDLASFLRAFNKKSLIS 188
           N+  R LN             AS L A+NKKS IS
Sbjct: 56  NQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,560
Number of Sequences: 5004
Number of extensions: 23637
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)