Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O16
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     65   2e-11
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     63   5e-11
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    61   2e-10
06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786           26   7.4  
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621...    26   9.8  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 28/41 (68%), Positives = 37/41 (90%)
 Frame = +3

Query: 171 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRF 293
           MP++I +IKDFLL ARRKDA+SV+IK++ + VKFKVRCSR+
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRY 41



 Score = 30.7 bits (66), Expect = 0.34
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 295 LYTLVITDNENAEKLKQSLP 354
           LYTL + D + A KLKQSLP
Sbjct: 42  LYTLCVHDTDKANKLKQSLP 61


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 27/41 (65%), Positives = 36/41 (87%)
 Frame = +3

Query: 171 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRF 293
           MP++I +IKDFLL ARRKDA+SV+IK+  + VKFKVRCS++
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKY 41



 Score = 29.9 bits (64), Expect = 0.60
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 295 LYTLVITDNENAEKLKQSLP 354
           LYTL + D + A KLKQSLP
Sbjct: 42  LYTLCVFDADKANKLKQSLP 61


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/40 (65%), Positives = 35/40 (87%)
 Frame = +3

Query: 174 PREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRF 293
           P++I +IKDFLL ARRKDA+SV+IK+  + VKFKVRCS++
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKY 71



 Score = 29.9 bits (64), Expect = 0.60
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 295 LYTLVITDNENAEKLKQSLP 354
           LYTL + D + A KLKQSLP
Sbjct: 72  LYTLCVFDADKANKLKQSLP 91


>06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786
          Length = 137

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 186 KDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFPVHPRHHGQRECRETE 341
           K+ +   L+  RK+A   + KK     +    C +F V  R  G+REC + E
Sbjct: 48  KEERGRCLQRERKEACGSENKKEKGRER---GCEKFKVDGRKKGERECEKFE 96


>04_04_1032 -
           30259180-30260519,30260650-30260720,30261099-30262118,
           30263886-30264121
          Length = 888

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 249 KNPENVKFKVRCSRFPVHPRHHG-QRECRETETE 347
           K P++   + + S F    R    +REC ETETE
Sbjct: 377 KQPDSFSAEQKISEFAEKQRSDSCERECSETETE 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,029,027
Number of Sequences: 37544
Number of extensions: 130071
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)