Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O16
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    73   8e-14
AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical ...    31   0.18 
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    29   0.71 
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    28   1.6  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    28   1.6  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    28   1.6  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    28   1.6  
U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z78419-1|CAB01705.1|  306|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 72.5 bits (170), Expect = 8e-14
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +3

Query: 171 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRF 293
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASY 41



 Score = 35.5 bits (78), Expect = 0.011
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 295 LYTLVITDNENAEKLKQSLP 354
           LYTLV+ D + AEKLKQSLP
Sbjct: 42  LYTLVVADKDKAEKLKQSLP 61


>AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical
           protein Y54G11A.2 protein.
          Length = 210

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +3

Query: 138 FYSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFPVHPRHHG 317
           F+S   + H ++P +I +I + L K RRKD    K +++  + K + +  +     +   
Sbjct: 110 FHSHKQVKHTVVPTKINEIVNRLEKTRRKDDIDYKEERDARDAKERQKLKKLEQERKDRE 169

Query: 318 QRE 326
           ++E
Sbjct: 170 KKE 172


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 235 DLASFLRAFNKKSLISLISRGMMKCVMSLTL*NKINN 125
           DL  F   F+ K+L+  +SR +MK +++L L    NN
Sbjct: 352 DLFKFSCGFSGKNLVEQLSRDLMKTLLNLNLMENPNN 388


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
            protein F19F10.11a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 174  PREIKDIKDFLLKARRKDAKSVKIKKNPENVK-FKVRCSRFPVH---PRHHG--QREC 329
            P EI +   +  K  + DAK   +KK+P+  K  KV  S   V    P+H G  +REC
Sbjct: 843  PAEILEKPKWFRKTSKYDAKIAALKKDPKPAKPVKVPVSTSCVQCGTPKHEGLRKREC 900


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 144 SVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 272
           ++  IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 146 NIEYITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 144 SVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 272
           ++  IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 146 NIEYITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 144 SVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 272
           ++  IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 141 NIEYITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 102 PIIGLYLKLFILFYSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPEN 263
           PI+ +   +   F  VS I       E    KD   ++   D  S KIKK+PEN
Sbjct: 706 PILRIDRLIIDQFVPVSKIEKKTDVEEDDSFKDTSNRSDNTDGSSKKIKKSPEN 759


>Z78419-1|CAB01705.1|  306|Caenorhabditis elegans Hypothetical
           protein F26A3.1 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 LKLFILFYSVSDITHFIMPREIKD 191
           LK   LFY+VS + H  MP  +KD
Sbjct: 59  LKNQYLFYTVSSLNHVRMPDHLKD 82


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 182 NQGYQRFFVESA*ERCQIGKDKEEP*ECKVQGPLLSVPC 298
           N+G    +V+   +R QI KD+ +P  CKV  PL    C
Sbjct: 570 NEGDDCGYVQLVPDRMQI-KDEVQPFSCKVPRPLKGYIC 607


>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 78  CTNQYKLHRYFQINIACFIRDNCASC 1
           CTN YK H Y Q++ +  I D    C
Sbjct: 275 CTNNYKNHCYIQVDQSATIPDAQRIC 300


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 233 FGIFPTRFQQKIFDILDFTRHDEVCNVA 150
           FG+FP R   K+   LDFT  DE  N A
Sbjct: 291 FGLFPIRIFTKVDAYLDFT-DDEKGNTA 317


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 153 DITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVR 281
           +I+HF M + I+D+K +  + R ++    K++ N  EN++  +R
Sbjct: 419 NISHFQMAQYIEDLKSYGKRLRGEEWTLCKLEYNSIENIRSPLR 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,466,440
Number of Sequences: 27780
Number of extensions: 132937
Number of successful extensions: 335
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)