Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O16
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   1.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   1.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   7.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.9  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 149 ERHYTLHHAA*NQGYQRFFVESA*ERCQIGKDKEEP*ECK 268
           ERH TLHH     G +    E+     +I     EP ECK
Sbjct: 101 ERHITLHHCYDADGIKLMNEENGVMEIKI----REPVECK 136


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 149 ERHYTLHHAA*NQGYQRFFVESA*ERCQIGKDKEEP*ECK 268
           ERH TLHH     G +    E+     +I     EP ECK
Sbjct: 101 ERHITLHHCYDADGIKLMNEENGVMEIKI----REPVECK 136


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 236 GKDKEEP*ECKVQGPLLSVP 295
           GK+ E+P  C + G   +VP
Sbjct: 85  GKEGEDPYRCNICGKTFAVP 104


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 315 RDDEGVQGTESSGP*TLHSQGSSLSLP 235
           RD+     T++S P T+ + G++ +LP
Sbjct: 203 RDESKAGSTDASTPATVTTTGATTTLP 229


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 237 VKIKKNPENVKFKVRCSRFPVHP 305
           + I++ P  V   + C  FP  P
Sbjct: 337 INIEQIPVPVPVPIHCGNFPPRP 359


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 275 GPLLSVPCTPSSSR 316
           G   + PCTPS  R
Sbjct: 387 GAQFATPCTPSPPR 400


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 300 HPRHHGQRECRETE 341
           HP  HG+R+ R  +
Sbjct: 82  HPIRHGRRQSRSMD 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,893
Number of Sequences: 438
Number of extensions: 1677
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)