Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O15
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0355 + 16922863-16924224                                         30   1.1  
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699     28   4.6  
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001     27   6.0  
04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641...    27   8.0  

>09_04_0355 + 16922863-16924224
          Length = 453

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 51  SSRSLEFVPDMATGSP--PVTSGTELSSEIVGTHC 149
           +S  LE+V D+A G+P  P+T+  +  S+++ T C
Sbjct: 92  ASGDLEYVLDLAVGTPPQPITALLDTGSDLIWTQC 126


>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
          Length = 240

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 171 PVKLCIVYNEF-QLFPSLVPSQM*QGASLSP-YRAQIPNSGMILSRKTQYHFTRPG 10
           PV+ C V  ++ Q      PS       LS  YRA++     +++   +Y F RPG
Sbjct: 12  PVRYCGVLEDYEQQVDEEPPSPKSPSRKLSAAYRAELRRQNALINNGPRYRFRRPG 67


>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
          Length = 708

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 178 TKTREVVYSIQ*VPTISELSSVPDVTGGEPVAISGTNSKL 59
           T+  +  Y  +    I  +SSV  ++ G+ VAIS TNS+L
Sbjct: 455 TRHTDYEYDTRNANLIKRVSSVISISIGDAVAISTTNSEL 494


>04_01_0487 +
           6406826-6407086,6413538-6413996,6414401-6414570,
           6415146-6415175,6415777-6415939,6416020-6417132
          Length = 731

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 89  RLAPCHIWDGTKLGNSWNSLYTIHNFTGFSDFFLIYKLLEFILLI*QSYC*LYNLWHI 262
           RLA  ++ DGTKL + + ++  +    G   F      +EF+    +  C L NLW +
Sbjct: 453 RLAVLYVNDGTKLPDQFKNMQMLEEVVGIDVF---RHSMEFL----EGLCELKNLWRL 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,406
Number of Sequences: 37544
Number of extensions: 217285
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)